Gene annotation
Transcriptome id Sobic.006G141600.1
Synonym Sb06g022050
Functional annotation dehydrogenase, putative, expressed
UniProt C5YBX0
Pfam PF00180
Panther DB PTHR11822 PTHR11822:SF5
NCBI CDD -
KEGG Orthology K00031; IDH1, IDH2, isocitrate dehydrogenase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006102isocitrate metabolic process GO:0004450isocitrate dehydrogenase (NADP+) activity


Orthologs (automatic annotation)
TAIR AT5G14590 : Isocitrate/isopropylmalate dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g42920.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a010736
Brachypodium KQJ83487
Barley HORVU2Hr1G087970.10 , HORVU2Hr1G087970.9 , HORVU2Hr1G087970.8 , HORVU2Hr1G087970.5 , HORVU2Hr1G087970.4 , HORVU2Hr1G087970.7 , HORVU2Hr1G087970.6 , HORVU2Hr1G087970.1 , HORVU2Hr1G087970.3
Wheat TraesCS2D02G361100 , TraesCS2D02G361100 , TraesCS2A02G363500 , TraesCS2B02G381500 , TraesCS2B02G381500
Populus -


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cDNA sequences
Sobic.006G141600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G150600 expressed protein -
2 Sobic.002G292900 protein binding protein, putative, expressed -
3 Sobic.004G154300 ThiF family domain containing protein, putative, expressed K12164: UBA5, ubiquitin-like modifier-activating enzyme 5
4 Sobic.004G160700 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
5 Sobic.004G172500 expressed protein -
6 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
7 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
9 Sobic.006G257600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
10 Sobic.009G112300 kinase, pfkB family, putative, expressed -
11 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
12 Sobic.005G187400 A49-like RNA polymerase I associated factor family protein, expressed K03005: RPA49, DNA-directed RNA polymerase I subunit RPA49
13 Sobic.004G320700 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
14 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
15 Sobic.003G284700 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
16 Sobic.002G029100 GYF domain containing protein, putative, expressed -
17 Sobic.003G055200 expressed protein -
18 Sobic.008G088200 DnaK family protein, putative, expressed -
19 Sobic.003G206600 glycine-rich protein, putative, expressed -
20 Sobic.003G150900 protein transport protein-related, putative, expressed -


Gene co-expression network
sample Sobic006G141600 Sobic006G141600 Sobic005G150600 Sobic005G150600 Sobic006G141600--Sobic005G150600 Sobic002G292900 Sobic002G292900 Sobic006G141600--Sobic002G292900 Sobic004G154300 Sobic004G154300 Sobic006G141600--Sobic004G154300 Sobic004G160700 Sobic004G160700 Sobic006G141600--Sobic004G160700 Sobic004G172500 Sobic004G172500 Sobic006G141600--Sobic004G172500 Sobic010G244900 Sobic010G244900 Sobic006G141600--Sobic010G244900 Sobic003G159500 Sobic003G159500 Sobic006G141600--Sobic003G159500 Sobic009G113100 Sobic009G113100 Sobic006G141600--Sobic009G113100 Sobic006G257600 Sobic006G257600 Sobic006G141600--Sobic006G257600 Sobic005G150600--Sobic004G172500 Sobic005G150600--Sobic010G244900 Sobic002G076500 Sobic002G076500 Sobic005G150600--Sobic002G076500 Sobic005G150600--Sobic006G141600 Sobic007G153500 Sobic007G153500 Sobic005G150600--Sobic007G153500 Sobic005G150600--Sobic002G292900 Sobic004G213800 Sobic004G213800 Sobic005G150600--Sobic004G213800 Sobic004G030400 Sobic004G030400 Sobic005G150600--Sobic004G030400 Sobic009G112300 Sobic009G112300 Sobic005G150600--Sobic009G112300 Sobic004G320700 Sobic004G320700 Sobic002G292900--Sobic004G320700 Sobic002G292900--Sobic010G244900 Sobic009G166600 Sobic009G166600 Sobic002G292900--Sobic009G166600 Sobic002G313900 Sobic002G313900 Sobic002G292900--Sobic002G313900 Sobic006G032300 Sobic006G032300 Sobic002G292900--Sobic006G032300 Sobic010G086600 Sobic010G086600 Sobic002G292900--Sobic010G086600 Sobic005G034700 Sobic005G034700 Sobic002G292900--Sobic005G034700 Sobic001G237600 Sobic001G237600 Sobic002G292900--Sobic001G237600 Sobic001G340300 Sobic001G340300 Sobic002G292900--Sobic001G340300 Sobic006G061100 Sobic006G061100 Sobic004G154300--Sobic006G061100 Sobic004G282100 Sobic004G282100 Sobic004G154300--Sobic004G282100 Sobic003G150900 Sobic003G150900 Sobic004G154300--Sobic003G150900 Sobic004G154300--Sobic006G141600 Sobic001G168900 Sobic001G168900 Sobic004G154300--Sobic001G168900 Sobic004G154300--Sobic002G292900 Sobic001G458200 Sobic001G458200 Sobic004G154300--Sobic001G458200 Sobic002G029100 Sobic002G029100 Sobic004G154300--Sobic002G029100 Sobic006G245100 Sobic006G245100 Sobic004G154300--Sobic006G245100 Sobic005G197100 Sobic005G197100 Sobic004G160700--Sobic005G197100 Sobic003G004500 Sobic003G004500 Sobic004G160700--Sobic003G004500 Sobic007G018200 Sobic007G018200 Sobic004G160700--Sobic007G018200 Sobic004G160700--Sobic009G166600 Sobic005G114800 Sobic005G114800 Sobic004G160700--Sobic005G114800 Sobic001G524000 Sobic001G524000 Sobic004G160700--Sobic001G524000 Sobic008G160500 Sobic008G160500 Sobic004G160700--Sobic008G160500 Sobic002G322400 Sobic002G322400 Sobic004G160700--Sobic002G322400 Sobic004G160700--Sobic006G257600 Sobic004G172500--Sobic010G244900 Sobic004G172500--Sobic002G076500 Sobic004G172500--Sobic005G150600 Sobic003G363700 Sobic003G363700 Sobic004G172500--Sobic003G363700 Sobic001G030000 Sobic001G030000 Sobic004G172500--Sobic001G030000 Sobic004G172500--Sobic001G237600 Sobic009G228000 Sobic009G228000 Sobic004G172500--Sobic009G228000 Sobic004G172500--Sobic004G213800 Sobic003G272700 Sobic003G272700 Sobic004G172500--Sobic003G272700 Sobic010G244900--Sobic004G172500 Sobic010G244900--Sobic002G292900 Sobic010G244900--Sobic004G213800 Sobic010G244900--Sobic001G237600 Sobic010G244900--Sobic004G320700 Sobic006G039400 Sobic006G039400 Sobic010G244900--Sobic006G039400 Sobic003G043000 Sobic003G043000 Sobic010G244900--Sobic003G043000 Sobic003G241700 Sobic003G241700 Sobic010G244900--Sobic003G241700 Sobic010G244900--Sobic005G150600 Sobic006G179600 Sobic006G179600 Sobic003G159500--Sobic006G179600 Sobic003G159500--Sobic006G061100 Sobic010G207400 Sobic010G207400 Sobic003G159500--Sobic010G207400 Sobic009G132600 Sobic009G132600 Sobic003G159500--Sobic009G132600 Sobic010G071600 Sobic010G071600 Sobic003G159500--Sobic010G071600 Sobic010G273800 Sobic010G273800 Sobic003G159500--Sobic010G273800 Sobic007G042300 Sobic007G042300 Sobic003G159500--Sobic007G042300 Sobic002G403200 Sobic002G403200 Sobic003G159500--Sobic002G403200 Sobic003G159500--Sobic008G160500 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic007G187600 Sobic007G187600 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic009G113100--Sobic006G061100 Sobic006G257600--Sobic009G113100 Sobic003G055200 Sobic003G055200 Sobic006G257600--Sobic003G055200 Sobic002G315100 Sobic002G315100 Sobic006G257600--Sobic002G315100 Sobic002G354800 Sobic002G354800 Sobic006G257600--Sobic002G354800 Sobic010G223500 Sobic010G223500 Sobic006G257600--Sobic010G223500 Sobic006G257600--Sobic009G069200 Sobic002G306600 Sobic002G306600 Sobic006G257600--Sobic002G306600 Sobic006G015500 Sobic006G015500 Sobic006G257600--Sobic006G015500 Sobic003G284700 Sobic003G284700 Sobic006G257600--Sobic003G284700
Octagon: transcription factors


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