Gene annotation
Transcriptome id Sobic.010G244900.2,Sobic.010G244900.1,Sobic.010G244900.3
Synonym Sb10g028420
Functional annotation auxin efflux carrier, putative, expressed
UniProt A0A1W0VUM7 , A0A194YL87 , A0A194YL71
Pfam PF01535 PF12854 PF13041
Panther DB PTHR24015 PTHR24015 PTHR24015:SF302
NCBI CDD -
KEGG Orthology K17964; leucine-rich PPR motif-containing protein, mitochondrial
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G61990 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g20510.1 : auxin efflux carrier, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT76675
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G244900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G172500 expressed protein -
2 Sobic.002G292900 protein binding protein, putative, expressed -
3 Sobic.004G213800 expressed protein -
4 Sobic.001G237600 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
5 Sobic.004G320700 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
6 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
7 Sobic.003G043000 expressed protein -
8 Sobic.003G241700 SET domain containing protein, expressed -
9 Sobic.005G150600 expressed protein -
10 Sobic.005G133800 NEF1, putative, expressed -
11 Sobic.002G079000 expressed protein -
12 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2
13 Sobic.003G296900 expressed protein -
14 Sobic.010G186100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.008G152000 biotin--protein ligase, putative, expressed K03801: lipoyl(octanoyl) transferase
16 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
17 Sobic.006G179100 transmembrane protein, putative, expressed -
18 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
19 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
20 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1


Gene co-expression network
sample Sobic010G244900 Sobic010G244900 Sobic004G172500 Sobic004G172500 Sobic010G244900--Sobic004G172500 Sobic002G292900 Sobic002G292900 Sobic010G244900--Sobic002G292900 Sobic004G213800 Sobic004G213800 Sobic010G244900--Sobic004G213800 Sobic001G237600 Sobic001G237600 Sobic010G244900--Sobic001G237600 Sobic004G320700 Sobic004G320700 Sobic010G244900--Sobic004G320700 Sobic006G039400 Sobic006G039400 Sobic010G244900--Sobic006G039400 Sobic003G043000 Sobic003G043000 Sobic010G244900--Sobic003G043000 Sobic003G241700 Sobic003G241700 Sobic010G244900--Sobic003G241700 Sobic005G150600 Sobic005G150600 Sobic010G244900--Sobic005G150600 Sobic004G172500--Sobic010G244900 Sobic002G076500 Sobic002G076500 Sobic004G172500--Sobic002G076500 Sobic004G172500--Sobic005G150600 Sobic003G363700 Sobic003G363700 Sobic004G172500--Sobic003G363700 Sobic001G030000 Sobic001G030000 Sobic004G172500--Sobic001G030000 Sobic004G172500--Sobic001G237600 Sobic009G228000 Sobic009G228000 Sobic004G172500--Sobic009G228000 Sobic004G172500--Sobic004G213800 Sobic003G272700 Sobic003G272700 Sobic004G172500--Sobic003G272700 Sobic002G292900--Sobic004G320700 Sobic002G292900--Sobic010G244900 Sobic009G166600 Sobic009G166600 Sobic002G292900--Sobic009G166600 Sobic002G313900 Sobic002G313900 Sobic002G292900--Sobic002G313900 Sobic006G032300 Sobic006G032300 Sobic002G292900--Sobic006G032300 Sobic010G086600 Sobic010G086600 Sobic002G292900--Sobic010G086600 Sobic005G034700 Sobic005G034700 Sobic002G292900--Sobic005G034700 Sobic002G292900--Sobic001G237600 Sobic001G340300 Sobic001G340300 Sobic002G292900--Sobic001G340300 Sobic004G213800--Sobic003G241700 Sobic001G151100 Sobic001G151100 Sobic004G213800--Sobic001G151100 Sobic004G213800--Sobic010G244900 Sobic004G213800--Sobic009G228000 Sobic003G296900 Sobic003G296900 Sobic004G213800--Sobic003G296900 Sobic004G213800--Sobic003G043000 Sobic005G167700 Sobic005G167700 Sobic004G213800--Sobic005G167700 Sobic001G275300 Sobic001G275300 Sobic004G213800--Sobic001G275300 Sobic007G000300 Sobic007G000300 Sobic004G213800--Sobic007G000300 Sobic001G237600--Sobic003G363700 Sobic001G237600--Sobic004G320700 Sobic002G079000 Sobic002G079000 Sobic001G237600--Sobic002G079000 Sobic007G087000 Sobic007G087000 Sobic001G237600--Sobic007G087000 Sobic001G237600--Sobic006G039400 Sobic003G202600 Sobic003G202600 Sobic001G237600--Sobic003G202600 Sobic001G237600--Sobic010G244900 Sobic001G095000 Sobic001G095000 Sobic001G237600--Sobic001G095000 Sobic001G237600--Sobic002G292900 Sobic004G320700--Sobic002G292900 Sobic004G320700--Sobic001G237600 Sobic004G320700--Sobic002G079000 Sobic010G186100 Sobic010G186100 Sobic004G320700--Sobic010G186100 Sobic004G320700--Sobic010G244900 Sobic006G210700 Sobic006G210700 Sobic004G320700--Sobic006G210700 Sobic004G320700--Sobic007G087000 Sobic004G320700--Sobic006G032300 Sobic004G320700--Sobic009G228000 Sobic006G093300 Sobic006G093300 Sobic006G039400--Sobic006G093300 Sobic001G405600 Sobic001G405600 Sobic006G039400--Sobic001G405600 Sobic006G039400--Sobic003G296900 Sobic006G039400--Sobic001G237600 Sobic003G182300 Sobic003G182300 Sobic006G039400--Sobic003G182300 Sobic010G230600 Sobic010G230600 Sobic006G039400--Sobic010G230600 Sobic007G162100 Sobic007G162100 Sobic006G039400--Sobic007G162100 Sobic006G039400--Sobic007G087000 Sobic001G283600 Sobic001G283600 Sobic006G039400--Sobic001G283600 Sobic004G265500 Sobic004G265500 Sobic003G043000--Sobic004G265500 Sobic001G308400 Sobic001G308400 Sobic003G043000--Sobic001G308400 Sobic003G043000--Sobic003G296900 Sobic004G357100 Sobic004G357100 Sobic003G043000--Sobic004G357100 Sobic003G043000--Sobic003G241700 Sobic003G043000--Sobic009G228000 SobicK028600 SobicK028600 Sobic003G043000--SobicK028600 Sobic003G163200 Sobic003G163200 Sobic003G043000--Sobic003G163200 Sobic002G227500 Sobic002G227500 Sobic003G043000--Sobic002G227500 Sobic003G241700--Sobic003G043000 Sobic003G241700--Sobic003G296900 Sobic003G241700--Sobic009G228000 Sobic004G209700 Sobic004G209700 Sobic003G241700--Sobic004G209700 Sobic003G241700--Sobic004G265500 Sobic010G000800 Sobic010G000800 Sobic003G241700--Sobic010G000800 Sobic006G234700 Sobic006G234700 Sobic003G241700--Sobic006G234700 Sobic003G241700--Sobic004G213800 Sobic010G034100 Sobic010G034100 Sobic003G241700--Sobic010G034100 Sobic005G150600--Sobic004G172500 Sobic005G150600--Sobic010G244900 Sobic005G150600--Sobic002G076500 Sobic006G141600 Sobic006G141600 Sobic005G150600--Sobic006G141600 Sobic007G153500 Sobic007G153500 Sobic005G150600--Sobic007G153500 Sobic005G150600--Sobic002G292900 Sobic005G150600--Sobic004G213800 Sobic004G030400 Sobic004G030400 Sobic005G150600--Sobic004G030400 Sobic009G112300 Sobic009G112300 Sobic005G150600--Sobic009G112300
Octagon: transcription factors


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