Gene annotation
Transcriptome id Sobic.006G093300.1
Synonym Sb06g017820
Functional annotation expressed protein
UniProt A0A097PN30 , A0A1B6PL38
Pfam PF01926 PF11987
Panther DB PTHR23115 PTHR23115:SF184
NCBI CDD -
KEGG Orthology K02519; infB, translation initiation factor IF-2
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G11160 : Translation initiation factor 2, small GTP-binding protein
RAP-DB (Rice) LOC_Os09g34010.1 : expressed protein
MaizeGDB (Corn) Zm00025a011232
Brachypodium KQK07902
Barley HORVU1Hr1G077340.6 , HORVU1Hr1G077340.7 , HORVU1Hr1G077340.4 , HORVU1Hr1G077340.5 , HORVU1Hr1G077340.2 , HORVU1Hr1G077340.3 , HORVU1Hr1G077340.1 , HORVU1Hr1G077340.8 , HORVU1Hr1G077340.9
Wheat TraesCS1A02G331200 , TraesCS1A02G331200 , TraesCS1B02G345100 , TraesCS1B02G345100 , TraesCS1D02G333900 , TraesCS1D02G333900
Populus -


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cDNA sequences
Sobic.006G093300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
2 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
3 Sobic.008G185800 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
4 Sobic.003G241700 SET domain containing protein, expressed -
5 Sobic.001G283600 NTMC2Type1.2 protein, putative, expressed -
6 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
7 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
8 Sobic.003G296900 expressed protein -
9 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
10 Sobic.003G311900 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed -
11 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
12 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
13 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
14 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
15 Sobic.004G089000 sterol glucosyltransferase, putative, expressed -
16 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
17 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
18 Sobic.003G289500 selenium-binding protein, related, putative, expressed -
19 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
20 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G


Gene co-expression network
sample Sobic006G093300 Sobic006G093300 Sobic006G039400 Sobic006G039400 Sobic006G093300--Sobic006G039400 Sobic001G434200 Sobic001G434200 Sobic006G093300--Sobic001G434200 Sobic008G185800 Sobic008G185800 Sobic006G093300--Sobic008G185800 Sobic003G241700 Sobic003G241700 Sobic006G093300--Sobic003G241700 Sobic001G283600 Sobic001G283600 Sobic006G093300--Sobic001G283600 Sobic001G333100 Sobic001G333100 Sobic006G093300--Sobic001G333100 Sobic003G308500 Sobic003G308500 Sobic006G093300--Sobic003G308500 Sobic003G296900 Sobic003G296900 Sobic006G093300--Sobic003G296900 Sobic006G184900 Sobic006G184900 Sobic006G093300--Sobic006G184900 Sobic006G039400--Sobic006G093300 Sobic001G405600 Sobic001G405600 Sobic006G039400--Sobic001G405600 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic003G182300 Sobic003G182300 Sobic006G039400--Sobic003G182300 Sobic010G230600 Sobic010G230600 Sobic006G039400--Sobic010G230600 Sobic007G162100 Sobic007G162100 Sobic006G039400--Sobic007G162100 Sobic007G087000 Sobic007G087000 Sobic006G039400--Sobic007G087000 Sobic006G039400--Sobic001G283600 Sobic007G071900 Sobic007G071900 Sobic001G434200--Sobic007G071900 Sobic001G434200--Sobic006G093300 Sobic001G434200--Sobic006G039400 Sobic001G468600 Sobic001G468600 Sobic001G434200--Sobic001G468600 Sobic001G434200--Sobic001G333100 Sobic004G171200 Sobic004G171200 Sobic001G434200--Sobic004G171200 Sobic008G087900 Sobic008G087900 Sobic001G434200--Sobic008G087900 Sobic004G121300 Sobic004G121300 Sobic001G434200--Sobic004G121300 Sobic001G014800 Sobic001G014800 Sobic001G434200--Sobic001G014800 Sobic008G185800--Sobic006G093300 Sobic009G192300 Sobic009G192300 Sobic008G185800--Sobic009G192300 Sobic008G185800--Sobic003G241700 Sobic008G185800--Sobic006G184900 Sobic001G030000 Sobic001G030000 Sobic008G185800--Sobic001G030000 Sobic010G226000 Sobic010G226000 Sobic008G185800--Sobic010G226000 Sobic010G275400 Sobic010G275400 Sobic008G185800--Sobic010G275400 Sobic001G503900 Sobic001G503900 Sobic008G185800--Sobic001G503900 Sobic010G169900 Sobic010G169900 Sobic008G185800--Sobic010G169900 Sobic003G043000 Sobic003G043000 Sobic003G241700--Sobic003G043000 Sobic003G241700--Sobic003G296900 Sobic009G228000 Sobic009G228000 Sobic003G241700--Sobic009G228000 Sobic004G209700 Sobic004G209700 Sobic003G241700--Sobic004G209700 Sobic004G265500 Sobic004G265500 Sobic003G241700--Sobic004G265500 Sobic010G000800 Sobic010G000800 Sobic003G241700--Sobic010G000800 Sobic006G234700 Sobic006G234700 Sobic003G241700--Sobic006G234700 Sobic004G213800 Sobic004G213800 Sobic003G241700--Sobic004G213800 Sobic010G034100 Sobic010G034100 Sobic003G241700--Sobic010G034100 Sobic001G283600--Sobic007G162100 Sobic001G283600--Sobic010G034100 Sobic008G048300 Sobic008G048300 Sobic001G283600--Sobic008G048300 Sobic002G170200 Sobic002G170200 Sobic001G283600--Sobic002G170200 Sobic006G127600 Sobic006G127600 Sobic001G283600--Sobic006G127600 Sobic001G283600--Sobic006G039400 Sobic008G033500 Sobic008G033500 Sobic001G283600--Sobic008G033500 Sobic001G283600--Sobic006G093300 Sobic008G082500 Sobic008G082500 Sobic001G283600--Sobic008G082500 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic010G020400 Sobic010G020400 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic001G333100--Sobic008G033500 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic006G125500 Sobic006G125500 Sobic003G308500--Sobic006G125500 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic003G296900--Sobic003G043000 Sobic001G065100 Sobic001G065100 Sobic003G296900--Sobic001G065100 Sobic004G053500 Sobic004G053500 Sobic003G296900--Sobic004G053500 Sobic003G296900--Sobic003G308500 Sobic003G296900--Sobic004G265500 Sobic003G296900--Sobic003G241700 Sobic001G255800 Sobic001G255800 Sobic003G296900--Sobic001G255800 Sobic003G296900--Sobic010G000800 Sobic004G131300 Sobic004G131300 Sobic003G296900--Sobic004G131300 Sobic002G335600 Sobic002G335600 Sobic006G184900--Sobic002G335600 Sobic002G429300 Sobic002G429300 Sobic006G184900--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic006G184900--Sobic008G088872 Sobic002G042600 Sobic002G042600 Sobic006G184900--Sobic002G042600 Sobic001G370900 Sobic001G370900 Sobic006G184900--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic006G184900--Sobic009G131300 Sobic001G493700 Sobic001G493700 Sobic006G184900--Sobic001G493700 Sobic002G179400 Sobic002G179400 Sobic006G184900--Sobic002G179400 Sobic005G062200 Sobic005G062200 Sobic006G184900--Sobic005G062200
Octagon: transcription factors


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