Gene annotation
Transcriptome id Sobic.001G015400.1
Synonym Sb01g001500
Functional annotation elongation factor, putative, expressed
UniProt C5WSZ1
Pfam PF03144 PF00679 PF14492 PF03764 PF00009
Panther DB PTHR23115 PTHR23115:SF162
NCBI CDD -
KEGG Orthology K02355; fusA, GFM, elongation factor G
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G45332 : Translation elongation factor EFG/EF2 protein
RAP-DB (Rice) LOC_Os03g36780.1 : elongation factor, putative, expressed
MaizeGDB (Corn) Zm00025a009006
Brachypodium PNT75938 , KQK18372
Barley HORVU7Hr1G082910.11 , HORVU7Hr1G082910.9 , HORVU7Hr1G082910.8 , HORVU7Hr1G082910.1 , HORVU7Hr1G082910.3 , HORVU7Hr1G082910.2 , HORVU7Hr1G082910.5 , HORVU7Hr1G082910.4 , HORVU7Hr1G082910.7 , HORVU7Hr1G082910.6 , HORVU7Hr1G082910.10
Wheat TraesCS7B02G248200 , TraesCS7B02G248200 , TraesCS7B02G248200 , TraesCS7A02G336600 , TraesCS7B02G248200 , TraesCS7D02G344300 , TraesCS7D02G344300 , TraesCS7D02G344300 , TraesCS7D02G344300 , TraesCS7A02G336600 , TraesCS7A02G336600 , TraesCS7A02G336600
Populus -


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cDNA sequences
Sobic.001G015400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
2 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
3 Sobic.007G005500 ECT protein, putative, expressed -
4 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
5 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
6 Sobic.006G260500 expressed protein -
7 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
8 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
9 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
10 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
11 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
12 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
13 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
14 Sobic.008G124800 expressed protein -
15 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
17 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
18 Sobic.002G408900 adenyl cyclase, putative, expressed -
19 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
20 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein


Gene co-expression network
sample Sobic001G015400 Sobic001G015400 Sobic001G099900 Sobic001G099900 Sobic001G015400--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic002G398700 Sobic002G398700 Sobic001G015400--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic001G015400--Sobic006G106300 Sobic001G099900--Sobic004G208500 Sobic001G099900--Sobic001G015400 Sobic001G467100 Sobic001G467100 Sobic001G099900--Sobic001G467100 Sobic002G150700 Sobic002G150700 Sobic001G099900--Sobic002G150700 Sobic003G146600 Sobic003G146600 Sobic001G099900--Sobic003G146600 Sobic001G474400 Sobic001G474400 Sobic001G099900--Sobic001G474400 Sobic001G428800 Sobic001G428800 Sobic001G099900--Sobic001G428800 Sobic006G142400 Sobic006G142400 Sobic001G099900--Sobic006G142400 Sobic001G156900 Sobic001G156900 Sobic001G099900--Sobic001G156900 Sobic004G208500--Sobic001G467100 Sobic004G208500--Sobic001G099900 Sobic004G208500--Sobic001G015400 Sobic002G408900 Sobic002G408900 Sobic004G208500--Sobic002G408900 Sobic004G208500--Sobic002G150700 Sobic001G161700 Sobic001G161700 Sobic004G208500--Sobic001G161700 Sobic010G223300 Sobic010G223300 Sobic004G208500--Sobic010G223300 Sobic005G110499 Sobic005G110499 Sobic004G208500--Sobic005G110499 Sobic005G163700 Sobic005G163700 Sobic004G208500--Sobic005G163700 Sobic003G209200 Sobic003G209200 Sobic007G005500--Sobic003G209200 Sobic004G241900 Sobic004G241900 Sobic007G005500--Sobic004G241900 Sobic005G062200 Sobic005G062200 Sobic007G005500--Sobic005G062200 Sobic007G005500--Sobic006G260500 Sobic007G005500--Sobic006G021700 Sobic010G169900 Sobic010G169900 Sobic007G005500--Sobic010G169900 Sobic010G000800 Sobic010G000800 Sobic007G005500--Sobic010G000800 Sobic004G261600 Sobic004G261600 Sobic007G005500--Sobic004G261600 Sobic006G077300 Sobic006G077300 Sobic007G005500--Sobic006G077300 Sobic008G124800 Sobic008G124800 Sobic006G021700--Sobic008G124800 Sobic006G021700--Sobic006G077300 Sobic002G340900 Sobic002G340900 Sobic006G021700--Sobic002G340900 Sobic005G059500 Sobic005G059500 Sobic006G021700--Sobic005G059500 Sobic006G021700--Sobic003G209200 Sobic003G346400 Sobic003G346400 Sobic006G021700--Sobic003G346400 Sobic006G021700--Sobic010G000800 Sobic006G021700--Sobic007G005500 Sobic006G021700--Sobic005G110499 Sobic003G143800--Sobic008G124800 Sobic003G143800--Sobic006G021700 Sobic003G143800--Sobic001G015400 Sobic007G155500 Sobic007G155500 Sobic003G143800--Sobic007G155500 Sobic008G092800 Sobic008G092800 Sobic003G143800--Sobic008G092800 Sobic003G143800--Sobic002G340900 Sobic004G141800 Sobic004G141800 Sobic003G143800--Sobic004G141800 Sobic005G114500 Sobic005G114500 Sobic003G143800--Sobic005G114500 Sobic003G405500 Sobic003G405500 Sobic003G143800--Sobic003G405500 Sobic003G114400 Sobic003G114400 Sobic006G260500--Sobic003G114400 Sobic006G260500--Sobic006G077300 Sobic006G260500--Sobic004G241900 Sobic006G260500--Sobic003G209200 Sobic006G260500--Sobic010G223300 Sobic006G260500--Sobic005G062200 Sobic006G260500--Sobic007G005500 Sobic007G075500 Sobic007G075500 Sobic006G260500--Sobic007G075500 Sobic006G260500--Sobic006G021700 Sobic010G223400 Sobic010G223400 Sobic003G182300--Sobic010G223400 Sobic003G363700 Sobic003G363700 Sobic003G182300--Sobic003G363700 Sobic001G449900 Sobic001G449900 Sobic003G182300--Sobic001G449900 Sobic003G182300--Sobic001G474400 Sobic003G193500 Sobic003G193500 Sobic003G182300--Sobic003G193500 Sobic003G182300--Sobic010G169900 Sobic003G182300--Sobic001G015400 Sobic007G042900 Sobic007G042900 Sobic003G182300--Sobic007G042900 Sobic003G181700 Sobic003G181700 Sobic003G182300--Sobic003G181700 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic002G398700--Sobic006G106300 Sobic010G091400 Sobic010G091400 Sobic002G398700--Sobic010G091400 Sobic002G398700--Sobic001G015400 Sobic002G398700--Sobic002G150700 Sobic005G026400 Sobic005G026400 Sobic002G398700--Sobic005G026400 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900 Sobic003G409900 Sobic003G409900 Sobic006G106300--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic006G106300--Sobic003G021600 Sobic006G106300--Sobic002G398700 Sobic001G097900 Sobic001G097900 Sobic006G106300--Sobic001G097900 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic006G106300--Sobic001G474400 Sobic006G106300--Sobic002G364900
Octagon: transcription factors


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