Gene annotation
Transcriptome id Sobic.004G208500.1
Synonym Sb04g025410
Functional annotation eukaryotic translation initiation factor 2A, putative, expressed
UniProt C5XX81
Pfam PF08662
Panther DB PTHR13227
NCBI CDD KOG2315; Predicted translation initiation factor related to eIF-3a
KEGG Orthology K15026; translation initiation factor 2A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G73180 : Eukaryotic translation initiation factor eIF2A family protein
RAP-DB (Rice) LOC_Os02g39350.1 : eukaryotic translation initiation factor 2A, putative, expressed
MaizeGDB (Corn) Zm00025a021249
Brachypodium KQK00250 , KQK00180
Barley HORVU6Hr1G055460.4 , HORVU6Hr1G055460.5 , HORVU6Hr1G055460.6 , HORVU6Hr1G055460.7 , HORVU6Hr1G055460.1 , HORVU6Hr1G055460.2 , HORVU6Hr1G055460.3 , HORVU6Hr1G055460.8 , HORVU6Hr1G055460.9 , HORVU6Hr1G055460.12 , HORVU6Hr1G055460.13 , HORVU6Hr1G055460.10 , HORVU6Hr1G055460.11
Wheat TraesCS6A02G216300 , TraesCS6A02G216300 , TraesCS6A02G216300 , TraesCS6A02G216300 , TraesCS6B02G246600 , TraesCS6B02G246600 , TraesCS6B02G246600 , TraesCS6B02G246600 , TraesCS6B02G246600 , TraesCS6D02G199300 , TraesCS6D02G199300 , TraesCS6D02G199300
Populus -


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cDNA sequences
Sobic.004G208500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
2 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
3 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
4 Sobic.002G408900 adenyl cyclase, putative, expressed -
5 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
6 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
7 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
8 Sobic.005G110499 - K14006: protein transport protein SEC23
9 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
10 Sobic.008G085700 exocyst complex component 5, putative, expressed -
11 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
12 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
13 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
14 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
15 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
16 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
17 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
18 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
19 Sobic.003G023300 Alg9-like mannosyltransferase protein, putative, expressed K03846: alpha-1,2-mannosyltransferase
20 Sobic.001G358500 GA20734-PA, putative, expressed -


Gene co-expression network
sample Sobic004G208500 Sobic004G208500 Sobic001G467100 Sobic001G467100 Sobic004G208500--Sobic001G467100 Sobic001G099900 Sobic001G099900 Sobic004G208500--Sobic001G099900 Sobic001G015400 Sobic001G015400 Sobic004G208500--Sobic001G015400 Sobic002G408900 Sobic002G408900 Sobic004G208500--Sobic002G408900 Sobic002G150700 Sobic002G150700 Sobic004G208500--Sobic002G150700 Sobic001G161700 Sobic001G161700 Sobic004G208500--Sobic001G161700 Sobic010G223300 Sobic010G223300 Sobic004G208500--Sobic010G223300 Sobic005G110499 Sobic005G110499 Sobic004G208500--Sobic005G110499 Sobic005G163700 Sobic005G163700 Sobic004G208500--Sobic005G163700 Sobic001G467100--Sobic004G208500 Sobic010G172400 Sobic010G172400 Sobic001G467100--Sobic010G172400 Sobic001G474400 Sobic001G474400 Sobic001G467100--Sobic001G474400 Sobic001G467100--Sobic001G099900 Sobic003G222700 Sobic003G222700 Sobic001G467100--Sobic003G222700 Sobic007G145400 Sobic007G145400 Sobic001G467100--Sobic007G145400 Sobic005G114500 Sobic005G114500 Sobic001G467100--Sobic005G114500 Sobic001G467100--Sobic001G161700 Sobic001G467100--Sobic005G110499 Sobic001G099900--Sobic004G208500 Sobic001G099900--Sobic001G015400 Sobic001G099900--Sobic001G467100 Sobic001G099900--Sobic002G150700 Sobic003G146600 Sobic003G146600 Sobic001G099900--Sobic003G146600 Sobic001G099900--Sobic001G474400 Sobic001G428800 Sobic001G428800 Sobic001G099900--Sobic001G428800 Sobic006G142400 Sobic006G142400 Sobic001G099900--Sobic006G142400 Sobic001G156900 Sobic001G156900 Sobic001G099900--Sobic001G156900 Sobic001G015400--Sobic001G099900 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic002G398700 Sobic002G398700 Sobic001G015400--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic001G015400--Sobic006G106300 Sobic002G408900--Sobic002G150700 Sobic009G249800 Sobic009G249800 Sobic002G408900--Sobic009G249800 Sobic002G408900--Sobic004G208500 Sobic002G246700 Sobic002G246700 Sobic002G408900--Sobic002G246700 Sobic002G408900--Sobic001G015400 Sobic002G408900--Sobic002G398700 Sobic006G193300 Sobic006G193300 Sobic002G408900--Sobic006G193300 Sobic002G160700 Sobic002G160700 Sobic002G408900--Sobic002G160700 Sobic002G408900--Sobic001G099900 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic002G150700--Sobic003G146600 Sobic002G150700--Sobic001G099900 Sobic002G150700--Sobic004G208500 Sobic002G150700--Sobic002G398700 Sobic001G145400 Sobic001G145400 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400 Sobic002G070600 Sobic002G070600 Sobic001G161700--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic001G161700--Sobic008G072200 Sobic001G490500 Sobic001G490500 Sobic001G161700--Sobic001G490500 Sobic001G012900 Sobic001G012900 Sobic001G161700--Sobic001G012900 Sobic001G023100 Sobic001G023100 Sobic001G161700--Sobic001G023100 Sobic003G346400 Sobic003G346400 Sobic001G161700--Sobic003G346400 Sobic004G000100 Sobic004G000100 Sobic001G161700--Sobic004G000100 Sobic004G254800 Sobic004G254800 Sobic001G161700--Sobic004G254800 Sobic008G085700 Sobic008G085700 Sobic001G161700--Sobic008G085700 Sobic008G055900 Sobic008G055900 Sobic010G223300--Sobic008G055900 Sobic001G449900 Sobic001G449900 Sobic010G223300--Sobic001G449900 Sobic002G020700 Sobic002G020700 Sobic010G223300--Sobic002G020700 Sobic003G338500 Sobic003G338500 Sobic010G223300--Sobic003G338500 Sobic010G223300--Sobic006G260500 Sobic004G092500 Sobic004G092500 Sobic010G223300--Sobic004G092500 Sobic010G020400 Sobic010G020400 Sobic010G223300--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic010G223300--Sobic002G008800 Sobic006G180000 Sobic006G180000 Sobic010G223300--Sobic006G180000 Sobic003G189600 Sobic003G189600 Sobic005G110499--Sobic003G189600 Sobic005G110499--Sobic001G474400 Sobic001G308400 Sobic001G308400 Sobic005G110499--Sobic001G308400 Sobic003G394200 Sobic003G394200 Sobic005G110499--Sobic003G394200 Sobic004G053500 Sobic004G053500 Sobic005G110499--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic005G110499--Sobic002G401500 Sobic005G110499--Sobic006G021700 Sobic002G371700 Sobic002G371700 Sobic005G110499--Sobic002G371700 Sobic003G209200 Sobic003G209200 Sobic005G110499--Sobic003G209200 Sobic001G460500 Sobic001G460500 Sobic005G163700--Sobic001G460500 Sobic002G423500 Sobic002G423500 Sobic005G163700--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic005G163700--Sobic002G014400 Sobic004G047200 Sobic004G047200 Sobic005G163700--Sobic004G047200 Sobic004G215700 Sobic004G215700 Sobic005G163700--Sobic004G215700 Sobic004G326600 Sobic004G326600 Sobic005G163700--Sobic004G326600 Sobic005G163700--Sobic001G467100 Sobic005G163700--Sobic004G208500 Sobic002G412700 Sobic002G412700 Sobic005G163700--Sobic002G412700
Octagon: transcription factors


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