Gene annotation
Transcriptome id Sobic.001G099900.1,Sobic.001G099900.2
Synonym Sb01g008930
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1Z5S551 , A0A1B6QI85
Pfam -
Panther DB PTHR22844 PTHR22844:SF238
NCBI CDD KOG2048; WD40 repeat protein
KEGG Orthology K14548; UTP4, U3 small nucleolar RNA-associated protein 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G07410 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os03g52470.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016865 , Zm00025a008035
Brachypodium KQK13345
Barley HORVU4Hr1G010910.1 , HORVU4Hr1G010910.3 , HORVU4Hr1G010910.2 , HORVU4Hr1G010910.4 , HORVU4Hr1G010910.6 , HORVU4Hr1G010910.5
Wheat TraesCS4D02G064400 , TraesCS4A02G249300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G099900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
2 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
3 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
4 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
5 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
6 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
7 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
8 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
9 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G211900 methyltransferase, putative, expressed K11437: type I protein arginine methyltransferase
12 Sobic.009G122500 expressed protein -
13 Sobic.002G408900 adenyl cyclase, putative, expressed -
14 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
15 Sobic.001G384400 glucosyltransferase, putative, expressed K03848: alpha-1,3-glucosyltransferase
16 Sobic.005G110499 - K14006: protein transport protein SEC23
17 Sobic.001G289700 actin-related protein 2/3 complex subunit 2, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
18 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
19 Sobic.002G428100 tim44-like domain containing protein, expressed K17804: mitochondrial import inner membrane translocase subunit TIM44
20 Sobic.002G131400 GPI mannosyltransferase 1, putative, expressed K05284: GPI mannosyltransferase 1 subunit M


Gene co-expression network
sample Sobic001G099900 Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic001G099900--Sobic004G208500 Sobic001G015400 Sobic001G015400 Sobic001G099900--Sobic001G015400 Sobic001G467100 Sobic001G467100 Sobic001G099900--Sobic001G467100 Sobic002G150700 Sobic002G150700 Sobic001G099900--Sobic002G150700 Sobic003G146600 Sobic003G146600 Sobic001G099900--Sobic003G146600 Sobic001G474400 Sobic001G474400 Sobic001G099900--Sobic001G474400 Sobic001G428800 Sobic001G428800 Sobic001G099900--Sobic001G428800 Sobic006G142400 Sobic006G142400 Sobic001G099900--Sobic006G142400 Sobic001G156900 Sobic001G156900 Sobic001G099900--Sobic001G156900 Sobic004G208500--Sobic001G467100 Sobic004G208500--Sobic001G099900 Sobic004G208500--Sobic001G015400 Sobic002G408900 Sobic002G408900 Sobic004G208500--Sobic002G408900 Sobic004G208500--Sobic002G150700 Sobic001G161700 Sobic001G161700 Sobic004G208500--Sobic001G161700 Sobic010G223300 Sobic010G223300 Sobic004G208500--Sobic010G223300 Sobic005G110499 Sobic005G110499 Sobic004G208500--Sobic005G110499 Sobic005G163700 Sobic005G163700 Sobic004G208500--Sobic005G163700 Sobic001G015400--Sobic001G099900 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic002G398700 Sobic002G398700 Sobic001G015400--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic001G015400--Sobic006G106300 Sobic001G467100--Sobic004G208500 Sobic010G172400 Sobic010G172400 Sobic001G467100--Sobic010G172400 Sobic001G467100--Sobic001G474400 Sobic001G467100--Sobic001G099900 Sobic003G222700 Sobic003G222700 Sobic001G467100--Sobic003G222700 Sobic007G145400 Sobic007G145400 Sobic001G467100--Sobic007G145400 Sobic005G114500 Sobic005G114500 Sobic001G467100--Sobic005G114500 Sobic001G467100--Sobic001G161700 Sobic001G467100--Sobic005G110499 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic002G150700--Sobic003G146600 Sobic002G150700--Sobic001G099900 Sobic002G150700--Sobic004G208500 Sobic002G150700--Sobic002G398700 Sobic001G145400 Sobic001G145400 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400 Sobic003G308500 Sobic003G308500 Sobic003G146600--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic003G146600--Sobic004G224600 Sobic003G146600--Sobic006G002800 Sobic002G235200 Sobic002G235200 Sobic003G146600--Sobic002G235200 Sobic003G146600--Sobic001G145400 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G012000 Sobic003G012000 Sobic003G146600--Sobic003G012000 Sobic001G474400--Sobic005G110499 Sobic003G397900 Sobic003G397900 Sobic001G474400--Sobic003G397900 Sobic001G474400--Sobic007G145400 Sobic001G097900 Sobic001G097900 Sobic001G474400--Sobic001G097900 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic010G223400 Sobic010G223400 Sobic001G474400--Sobic010G223400 Sobic001G474400--Sobic001G467100 Sobic006G265600 Sobic006G265600 Sobic001G474400--Sobic006G265600 Sobic001G358500 Sobic001G358500 Sobic001G428800--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G428800--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G428800--Sobic010G230600 Sobic004G092500 Sobic004G092500 Sobic001G428800--Sobic004G092500 Sobic001G428800--Sobic010G223300 Sobic001G211900 Sobic001G211900 Sobic001G428800--Sobic001G211900 Sobic001G428800--Sobic001G099900 Sobic010G020400 Sobic010G020400 Sobic001G428800--Sobic010G020400 Sobic009G139300 Sobic009G139300 Sobic001G428800--Sobic009G139300 Sobic003G214300 Sobic003G214300 Sobic006G142400--Sobic003G214300 Sobic006G142400--Sobic001G099900 Sobic001G042200 Sobic001G042200 Sobic006G142400--Sobic001G042200 Sobic010G264000 Sobic010G264000 Sobic006G142400--Sobic010G264000 Sobic007G042900 Sobic007G042900 Sobic006G142400--Sobic007G042900 Sobic009G040800 Sobic009G040800 Sobic006G142400--Sobic009G040800 Sobic006G142400--Sobic002G150700 Sobic001G012900 Sobic001G012900 Sobic006G142400--Sobic001G012900 Sobic004G084500 Sobic004G084500 Sobic006G142400--Sobic004G084500 Sobic009G122500 Sobic009G122500 Sobic001G156900--Sobic009G122500 Sobic002G119600 Sobic002G119600 Sobic001G156900--Sobic002G119600 Sobic001G308400 Sobic001G308400 Sobic001G156900--Sobic001G308400 Sobic002G227500 Sobic002G227500 Sobic001G156900--Sobic002G227500 Sobic004G122900 Sobic004G122900 Sobic001G156900--Sobic004G122900 Sobic001G335000 Sobic001G335000 Sobic001G156900--Sobic001G335000 Sobic010G169900 Sobic010G169900 Sobic001G156900--Sobic010G169900 Sobic003G181700 Sobic003G181700 Sobic001G156900--Sobic003G181700 Sobic001G156900--Sobic005G110499
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.