Gene annotation
Transcriptome id Sobic.001G289700.1,Sobic.001G289700.4,Sobic.001G289700.3,Sobic.001G289700.2
Synonym DIS2, ARPC2A, Sb01g028390
Functional annotation actin-related protein 2/3 complex subunit 2, putative, expressed
UniProt C5WRC7 , A0A1B6QLS4
Pfam PF04045
Panther DB PTHR12058
NCBI CDD KOG2826; Actin-related protein Arp2/3 complex, subunit ARPC2
KEGG Orthology K05758; actin related protein 2/3 complex, subunit 2
Gene Ontology GO:0015629; actin cytoskeleton GO:0005885Arp2/3 protein complex


Orthologs (automatic annotation)
TAIR AT1G30825 : Arp2/3 complex, 34 kD subunit p34-Arc
RAP-DB (Rice) LOC_Os01g46580.1 : actin-related protein 2/3 complex subunit 2, putative, expressed
MaizeGDB (Corn) Zm00025a016072
Brachypodium -
Barley HORVU3Hr1G059010.23 , HORVU3Hr1G059010.21 , HORVU3Hr1G059010.20 , HORVU3Hr1G059010.24 , HORVU3Hr1G059010.8 , HORVU3Hr1G059010.9 , HORVU3Hr1G059010.1 , HORVU3Hr1G059010.2 , HORVU3Hr1G059010.3 , HORVU3Hr1G059010.4 , HORVU3Hr1G059010.5 , HORVU3Hr1G059010.6 , HORVU3Hr1G059010.7 , HORVU3Hr1G059010.12 , HORVU3Hr1G059010.13 , HORVU3Hr1G059010.10 , HORVU3Hr1G059010.11 , HORVU3Hr1G059010.16 , HORVU3Hr1G059010.14 , HORVU3Hr1G059010.15 , HORVU3Hr1G059010.18 , HORVU3Hr1G059010.19
Wheat TraesCS3D02G237300 , TraesCS3D02G237300 , TraesCS3A02G236900 , TraesCS3A02G236900 , TraesCS3B02G262900 , TraesCS3B02G262900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
2 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
3 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
4 Sobic.004G115800 sec20 domain containing protein, expressed K08497: protein transport protein SEC20
5 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
6 Sobic.010G223400 expressed protein -
7 Sobic.001G211900 methyltransferase, putative, expressed K11437: type I protein arginine methyltransferase
8 Sobic.007G105900 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed -
9 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
10 Sobic.003G214300 expressed protein -
11 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
12 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
13 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
14 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
15 Sobic.002G056701 - -
16 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
17 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
18 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
19 Sobic.008G104200 nitrilase, putative, expressed -
20 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -


Gene co-expression network
sample Sobic001G289700 Sobic001G289700 Sobic001G099900 Sobic001G099900 Sobic001G289700--Sobic001G099900 Sobic001G049400 Sobic001G049400 Sobic001G289700--Sobic001G049400 Sobic003G146600 Sobic003G146600 Sobic001G289700--Sobic003G146600 Sobic004G115800 Sobic004G115800 Sobic001G289700--Sobic004G115800 Sobic001G474400 Sobic001G474400 Sobic001G289700--Sobic001G474400 Sobic010G223400 Sobic010G223400 Sobic001G289700--Sobic010G223400 Sobic001G211900 Sobic001G211900 Sobic001G289700--Sobic001G211900 Sobic007G105900 Sobic007G105900 Sobic001G289700--Sobic007G105900 Sobic002G150700 Sobic002G150700 Sobic001G289700--Sobic002G150700 Sobic004G208500 Sobic004G208500 Sobic001G099900--Sobic004G208500 Sobic001G015400 Sobic001G015400 Sobic001G099900--Sobic001G015400 Sobic001G467100 Sobic001G467100 Sobic001G099900--Sobic001G467100 Sobic001G099900--Sobic002G150700 Sobic001G099900--Sobic003G146600 Sobic001G099900--Sobic001G474400 Sobic001G428800 Sobic001G428800 Sobic001G099900--Sobic001G428800 Sobic006G142400 Sobic006G142400 Sobic001G099900--Sobic006G142400 Sobic001G156900 Sobic001G156900 Sobic001G099900--Sobic001G156900 Sobic010G020400 Sobic010G020400 Sobic001G049400--Sobic010G020400 Sobic001G465400 Sobic001G465400 Sobic001G049400--Sobic001G465400 Sobic008G085700 Sobic008G085700 Sobic001G049400--Sobic008G085700 Sobic004G078700 Sobic004G078700 Sobic001G049400--Sobic004G078700 Sobic001G049400--Sobic001G211900 Sobic003G302200 Sobic003G302200 Sobic001G049400--Sobic003G302200 Sobic008G055900 Sobic008G055900 Sobic001G049400--Sobic008G055900 Sobic003G338500 Sobic003G338500 Sobic001G049400--Sobic003G338500 Sobic007G173700 Sobic007G173700 Sobic001G049400--Sobic007G173700 Sobic003G308500 Sobic003G308500 Sobic003G146600--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic003G146600--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic003G146600--Sobic006G002800 Sobic002G235200 Sobic002G235200 Sobic003G146600--Sobic002G235200 Sobic001G145400 Sobic001G145400 Sobic003G146600--Sobic001G145400 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G012000 Sobic003G012000 Sobic003G146600--Sobic003G012000 Sobic004G115800--Sobic008G055900 Sobic007G005500 Sobic007G005500 Sobic004G115800--Sobic007G005500 Sobic009G077600 Sobic009G077600 Sobic004G115800--Sobic009G077600 Sobic004G115800--Sobic001G289700 Sobic004G115800--Sobic001G099900 Sobic010G223300 Sobic010G223300 Sobic004G115800--Sobic010G223300 Sobic004G115800--Sobic008G085700 Sobic004G241900 Sobic004G241900 Sobic004G115800--Sobic004G241900 Sobic001G449900 Sobic001G449900 Sobic004G115800--Sobic001G449900 Sobic005G110499 Sobic005G110499 Sobic001G474400--Sobic005G110499 Sobic003G397900 Sobic003G397900 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G097900 Sobic001G097900 Sobic001G474400--Sobic001G097900 Sobic005G114500 Sobic005G114500 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic001G474400--Sobic010G223400 Sobic001G474400--Sobic001G467100 Sobic006G265600 Sobic006G265600 Sobic001G474400--Sobic006G265600 Sobic009G122500 Sobic009G122500 Sobic010G223400--Sobic009G122500 Sobic003G394200 Sobic003G394200 Sobic010G223400--Sobic003G394200 Sobic005G059500 Sobic005G059500 Sobic010G223400--Sobic005G059500 Sobic001G193100 Sobic001G193100 Sobic010G223400--Sobic001G193100 Sobic003G182300 Sobic003G182300 Sobic010G223400--Sobic003G182300 Sobic010G223400--Sobic005G114500 Sobic010G223400--Sobic001G474400 Sobic010G223400--Sobic004G078700 Sobic001G012900 Sobic001G012900 Sobic010G223400--Sobic001G012900 Sobic001G211900--Sobic001G049400 Sobic001G211900--Sobic010G223400 Sobic001G211900--Sobic001G428800 Sobic001G211900--Sobic001G467100 Sobic001G211900--Sobic001G099900 Sobic001G358500 Sobic001G358500 Sobic001G211900--Sobic001G358500 Sobic001G211900--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G211900--Sobic010G230600 Sobic001G211900--Sobic010G223300 Sobic001G405600 Sobic001G405600 Sobic007G105900--Sobic001G405600 Sobic001G035200 Sobic001G035200 Sobic007G105900--Sobic001G035200 Sobic007G017800 Sobic007G017800 Sobic007G105900--Sobic007G017800 Sobic002G136400 Sobic002G136400 Sobic007G105900--Sobic002G136400 Sobic001G207500 Sobic001G207500 Sobic007G105900--Sobic001G207500 Sobic010G059500 Sobic010G059500 Sobic007G105900--Sobic010G059500 Sobic010G034100 Sobic010G034100 Sobic007G105900--Sobic010G034100 Sobic002G131400 Sobic002G131400 Sobic007G105900--Sobic002G131400 Sobic007G189000 Sobic007G189000 Sobic007G105900--Sobic007G189000 Sobic002G408900 Sobic002G408900 Sobic002G150700--Sobic002G408900 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic002G150700--Sobic003G146600 Sobic002G150700--Sobic001G099900 Sobic002G150700--Sobic004G208500 Sobic002G398700 Sobic002G398700 Sobic002G150700--Sobic002G398700 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400
Octagon: transcription factors


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