Gene annotation
Transcriptome id Sobic.004G115800.1,Sobic.004G115800.3
Synonym Sb04g009630, AtSec20
Functional annotation sec20 domain containing protein, expressed
UniProt C5XZH4
Pfam PF03908
Panther DB PTHR12825 PTHR12825:SF0
NCBI CDD -
KEGG Orthology K08497; protein transport protein SEC20
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24315 : Sec20 family protein
RAP-DB (Rice) LOC_Os02g44111.1 : sec20 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019907 , Zm00025a007076
Brachypodium KQK00633 , KQK07091
Barley HORVU3Hr1G013820.3 , HORVU3Hr1G013820.2 , HORVU3Hr1G013820.1 , HORVU3Hr1G013820.7 , HORVU3Hr1G013820.15 , HORVU3Hr1G013820.5 , HORVU3Hr1G013820.4 , HORVU3Hr1G013820.9 , HORVU3Hr1G013820.8 , HORVU3Hr1G013820.13 , HORVU3Hr1G013820.34 , HORVU3Hr1G013820.11 , HORVU3Hr1G013820.36 , HORVU3Hr1G013820.31 , HORVU3Hr1G013820.30 , HORVU3Hr1G013820.33 , HORVU3Hr1G013820.14 , HORVU3Hr1G013820.19 , HORVU3Hr1G013820.18 , HORVU3Hr1G013820.6 , HORVU6Hr1G063210.1 , HORVU6Hr1G063210.10 , HORVU3Hr1G013820.28 , HORVU3Hr1G013820.29 , HORVU3Hr1G013820.22 , HORVU3Hr1G013820.23 , HORVU3Hr1G013820.20 , HORVU3Hr1G013820.21 , HORVU3Hr1G013820.26 , HORVU3Hr1G013820.27 , HORVU3Hr1G013820.24 , HORVU3Hr1G013820.25 , HORVU3Hr1G013820.35 , HORVU3Hr1G013820.12 , HORVU6Hr1G063210.2 , HORVU6Hr1G063210.3 , HORVU3Hr1G013820.10 , HORVU6Hr1G063210.6 , HORVU6Hr1G063210.7 , HORVU6Hr1G063210.4 , HORVU6Hr1G063210.5 , HORVU3Hr1G013820.17 , HORVU6Hr1G063210.8 , HORVU6Hr1G063210.9 , HORVU3Hr1G013820.16
Wheat TraesCS3A02G074700 , TraesCS6D02G231000 , TraesCSU02G049300 , TraesCS3A02G132200 , TraesCS6B02G275900 , TraesCS2B02G101900
Populus -


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cDNA sequences
Sobic.004G115800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
2 Sobic.007G005500 ECT protein, putative, expressed -
3 Sobic.009G077600 glycosyl hydrolase family 47 domain contain protein, expressed K01230: MAN1A_C, mannosyl-oligosaccharide alpha-1,2-mannosidase
4 Sobic.001G289700 actin-related protein 2/3 complex subunit 2, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
5 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
6 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
7 Sobic.008G085700 exocyst complex component 5, putative, expressed -
8 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
9 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
10 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
11 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
12 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
13 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
14 Sobic.009G131900 - K18177: cytochrome c oxidase assembly factor 4
15 Sobic.005G022100 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
16 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
17 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
18 Sobic.002G294100 DOMON domain containing protein, expressed -
19 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
20 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase


Gene co-expression network
sample Sobic004G115800 Sobic004G115800 Sobic008G055900 Sobic008G055900 Sobic004G115800--Sobic008G055900 Sobic007G005500 Sobic007G005500 Sobic004G115800--Sobic007G005500 Sobic009G077600 Sobic009G077600 Sobic004G115800--Sobic009G077600 Sobic001G289700 Sobic001G289700 Sobic004G115800--Sobic001G289700 Sobic001G099900 Sobic001G099900 Sobic004G115800--Sobic001G099900 Sobic010G223300 Sobic010G223300 Sobic004G115800--Sobic010G223300 Sobic008G085700 Sobic008G085700 Sobic004G115800--Sobic008G085700 Sobic004G241900 Sobic004G241900 Sobic004G115800--Sobic004G241900 Sobic001G449900 Sobic001G449900 Sobic004G115800--Sobic001G449900 Sobic002G020700 Sobic002G020700 Sobic008G055900--Sobic002G020700 Sobic008G055900--Sobic010G223300 Sobic008G103300 Sobic008G103300 Sobic008G055900--Sobic008G103300 Sobic010G020400 Sobic010G020400 Sobic008G055900--Sobic010G020400 Sobic006G136400 Sobic006G136400 Sobic008G055900--Sobic006G136400 Sobic001G447300 Sobic001G447300 Sobic008G055900--Sobic001G447300 Sobic008G055900--Sobic008G085700 Sobic006G056200 Sobic006G056200 Sobic008G055900--Sobic006G056200 Sobic008G129600 Sobic008G129600 Sobic008G055900--Sobic008G129600 Sobic003G209200 Sobic003G209200 Sobic007G005500--Sobic003G209200 Sobic007G005500--Sobic004G241900 Sobic005G062200 Sobic005G062200 Sobic007G005500--Sobic005G062200 Sobic006G260500 Sobic006G260500 Sobic007G005500--Sobic006G260500 Sobic006G021700 Sobic006G021700 Sobic007G005500--Sobic006G021700 Sobic010G169900 Sobic010G169900 Sobic007G005500--Sobic010G169900 Sobic010G000800 Sobic010G000800 Sobic007G005500--Sobic010G000800 Sobic004G261600 Sobic004G261600 Sobic007G005500--Sobic004G261600 Sobic006G077300 Sobic006G077300 Sobic007G005500--Sobic006G077300 Sobic009G077600--Sobic003G209200 Sobic009G077600--Sobic008G055900 Sobic009G077600--Sobic006G260500 Sobic004G207900 Sobic004G207900 Sobic009G077600--Sobic004G207900 Sobic004G100200 Sobic004G100200 Sobic009G077600--Sobic004G100200 Sobic006G239400 Sobic006G239400 Sobic009G077600--Sobic006G239400 Sobic009G077600--Sobic007G005500 Sobic003G050900 Sobic003G050900 Sobic009G077600--Sobic003G050900 Sobic009G077600--Sobic010G223300 Sobic001G289700--Sobic001G099900 Sobic001G049400 Sobic001G049400 Sobic001G289700--Sobic001G049400 Sobic003G146600 Sobic003G146600 Sobic001G289700--Sobic003G146600 Sobic001G289700--Sobic004G115800 Sobic001G474400 Sobic001G474400 Sobic001G289700--Sobic001G474400 Sobic010G223400 Sobic010G223400 Sobic001G289700--Sobic010G223400 Sobic001G211900 Sobic001G211900 Sobic001G289700--Sobic001G211900 Sobic007G105900 Sobic007G105900 Sobic001G289700--Sobic007G105900 Sobic002G150700 Sobic002G150700 Sobic001G289700--Sobic002G150700 Sobic004G208500 Sobic004G208500 Sobic001G099900--Sobic004G208500 Sobic001G015400 Sobic001G015400 Sobic001G099900--Sobic001G015400 Sobic001G467100 Sobic001G467100 Sobic001G099900--Sobic001G467100 Sobic001G099900--Sobic002G150700 Sobic001G099900--Sobic003G146600 Sobic001G099900--Sobic001G474400 Sobic001G428800 Sobic001G428800 Sobic001G099900--Sobic001G428800 Sobic006G142400 Sobic006G142400 Sobic001G099900--Sobic006G142400 Sobic001G156900 Sobic001G156900 Sobic001G099900--Sobic001G156900 Sobic010G223300--Sobic008G055900 Sobic010G223300--Sobic001G449900 Sobic010G223300--Sobic002G020700 Sobic003G338500 Sobic003G338500 Sobic010G223300--Sobic003G338500 Sobic010G223300--Sobic006G260500 Sobic004G092500 Sobic004G092500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic010G223300--Sobic002G008800 Sobic006G180000 Sobic006G180000 Sobic010G223300--Sobic006G180000 Sobic008G085700--Sobic002G020700 Sobic008G085700--Sobic001G449900 Sobic002G070600 Sobic002G070600 Sobic008G085700--Sobic002G070600 Sobic008G085700--Sobic010G020400 Sobic008G085700--Sobic008G055900 Sobic005G110499 Sobic005G110499 Sobic008G085700--Sobic005G110499 Sobic008G085700--Sobic001G049400 Sobic001G161700 Sobic001G161700 Sobic008G085700--Sobic001G161700 Sobic010G192600 Sobic010G192600 Sobic008G085700--Sobic010G192600 Sobic004G241900--Sobic007G005500 Sobic004G241900--Sobic006G260500 Sobic004G241900--Sobic003G209200 Sobic004G241900--Sobic005G062200 Sobic003G114400 Sobic003G114400 Sobic004G241900--Sobic003G114400 Sobic006G196300 Sobic006G196300 Sobic004G241900--Sobic006G196300 Sobic006G277000 Sobic006G277000 Sobic004G241900--Sobic006G277000 Sobic001G263600 Sobic001G263600 Sobic004G241900--Sobic001G263600 Sobic004G241900--Sobic004G261600 Sobic001G449900--Sobic010G223300 Sobic001G449900--Sobic002G020700 Sobic001G449900--Sobic008G085700 Sobic001G301200 Sobic001G301200 Sobic001G449900--Sobic001G301200 Sobic003G189600 Sobic003G189600 Sobic001G449900--Sobic003G189600 Sobic001G449900--Sobic001G428800 Sobic003G029600 Sobic003G029600 Sobic001G449900--Sobic003G029600 Sobic001G449900--Sobic010G020400 Sobic001G449900--Sobic007G005500
Octagon: transcription factors


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