Gene annotation
Transcriptome id Sobic.003G006400.1
Synonym TRZ4, Sb03g000750
Functional annotation metallo-beta-lactamase family protein, putative, expressed
UniProt C5XJM3
Pfam PF13691 PF12706
Panther DB PTHR12553 PTHR12553:SF49
NCBI CDD -
KEGG Orthology K00784; ribonuclease Z
Gene Ontology GO:0008033; tRNA processing


Orthologs (automatic annotation)
TAIR AT3G16260 : tRNAse Z4
RAP-DB (Rice) LOC_Os01g13150.1 : metallo-beta-lactamase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a035995
Brachypodium KQK03434 , KQK03632
Barley HORVU3Hr1G031690.18 , HORVU3Hr1G031690.19 , HORVU3Hr1G031690.16 , HORVU3Hr1G031690.17 , HORVU3Hr1G031690.14 , HORVU3Hr1G031690.15 , HORVU3Hr1G031690.12 , HORVU3Hr1G031690.13 , HORVU3Hr1G031690.10 , HORVU3Hr1G031690.11 , HORVU3Hr1G031690.8 , HORVU3Hr1G031690.9 , HORVU3Hr1G031690.4 , HORVU3Hr1G031690.5 , HORVU3Hr1G031690.6 , HORVU3Hr1G031690.7 , HORVU3Hr1G031690.3 , HORVU3Hr1G031690.27 , HORVU3Hr1G031690.26 , HORVU3Hr1G031690.25 , HORVU3Hr1G031690.24 , HORVU3Hr1G031690.23 , HORVU3Hr1G031690.22 , HORVU3Hr1G031690.21 , HORVU3Hr1G031690.28
Wheat TraesCS3A02G156100 , TraesCS3A02G156100 , TraesCS3D02G163900 , TraesCS3D02G163900 , TraesCS3B02G182700 , TraesCS3B02G182700
Populus PNT55342 , PNT55340 , PNT55341


JBrowse

Open New Page


cDNA sequences
Sobic.003G006400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
2 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
3 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
4 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
5 Sobic.006G138000 expressed protein -
6 Sobic.010G151900 ribonuclease P family protein, putative, expressed K03538: POP4, ribonuclease P protein subunit POP4
7 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
8 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
9 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
10 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
11 Sobic.006G204800 APO, putative, expressed -
12 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
13 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
14 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
15 Sobic.004G224600 expressed protein -
16 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
17 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
19 Sobic.003G036400 - K03254: translation initiation factor 3 subunit A
20 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase


Gene co-expression network
sample Sobic003G006400 Sobic003G006400 Sobic006G208500 Sobic006G208500 Sobic003G006400--Sobic006G208500 Sobic006G200700 Sobic006G200700 Sobic003G006400--Sobic006G200700 Sobic002G275600 Sobic002G275600 Sobic003G006400--Sobic002G275600 Sobic001G369000 Sobic001G369000 Sobic003G006400--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic003G006400--Sobic006G138000 Sobic010G151900 Sobic010G151900 Sobic003G006400--Sobic010G151900 Sobic001G145400 Sobic001G145400 Sobic003G006400--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G006400--Sobic006G077200 Sobic010G007100 Sobic010G007100 Sobic003G006400--Sobic010G007100 Sobic004G135400 Sobic004G135400 Sobic006G208500--Sobic004G135400 Sobic006G208500--Sobic003G006400 Sobic006G136400 Sobic006G136400 Sobic006G208500--Sobic006G136400 Sobic009G245800 Sobic009G245800 Sobic006G208500--Sobic009G245800 Sobic006G126100 Sobic006G126100 Sobic006G208500--Sobic006G126100 Sobic004G039600 Sobic004G039600 Sobic006G208500--Sobic004G039600 Sobic006G208500--Sobic006G200700 Sobic006G208500--Sobic001G369000 Sobic004G277200 Sobic004G277200 Sobic006G208500--Sobic004G277200 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic001G522600 Sobic001G522600 Sobic006G200700--Sobic001G522600 Sobic006G200700--Sobic003G006400 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic005G160100 Sobic005G160100 Sobic002G275600--Sobic005G160100 Sobic009G247400 Sobic009G247400 Sobic002G275600--Sobic009G247400 Sobic002G275600--Sobic008G014500 Sobic001G363500 Sobic001G363500 Sobic002G275600--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic002G275600--Sobic001G219600 Sobic001G441400 Sobic001G441400 Sobic002G275600--Sobic001G441400 Sobic002G397500 Sobic002G397500 Sobic002G275600--Sobic002G397500 Sobic002G275600--Sobic003G006400 Sobic010G209400 Sobic010G209400 Sobic002G275600--Sobic010G209400 Sobic001G369000--Sobic004G039600 Sobic001G335900 Sobic001G335900 Sobic001G369000--Sobic001G335900 Sobic007G120500 Sobic007G120500 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic001G369000--Sobic006G138000 Sobic009G049400 Sobic009G049400 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 Sobic001G170100 Sobic001G170100 Sobic006G138000--Sobic001G170100 Sobic001G518400 Sobic001G518400 Sobic006G138000--Sobic001G518400 Sobic006G138000--Sobic001G335900 Sobic006G138000--Sobic001G369000 Sobic010G275500 Sobic010G275500 Sobic006G138000--Sobic010G275500 Sobic006G138000--Sobic003G240700 Sobic003G187500 Sobic003G187500 Sobic006G138000--Sobic003G187500 Sobic006G138000--Sobic001G426600 Sobic010G053800 Sobic010G053800 Sobic006G138000--Sobic010G053800 Sobic006G253000 Sobic006G253000 Sobic010G151900--Sobic006G253000 Sobic010G151900--Sobic003G006400 Sobic010G166400 Sobic010G166400 Sobic010G151900--Sobic010G166400 Sobic010G151900--Sobic001G441400 Sobic004G006900 Sobic004G006900 Sobic010G151900--Sobic004G006900 Sobic010G151900--Sobic003G187500 Sobic010G151900--Sobic008G014500 Sobic006G195700 Sobic006G195700 Sobic010G151900--Sobic006G195700 Sobic005G027400 Sobic005G027400 Sobic010G151900--Sobic005G027400 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic006G077200--Sobic010G059500 Sobic006G077200--Sobic001G145400 Sobic001G493200 Sobic001G493200 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic004G096400 Sobic004G096400 Sobic006G077200--Sobic004G096400 Sobic010G007100--Sobic001G145400 Sobic008G147200 Sobic008G147200 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic010G007100--Sobic006G077200 Sobic002G235200 Sobic002G235200 Sobic010G007100--Sobic002G235200 Sobic006G002800 Sobic006G002800 Sobic010G007100--Sobic006G002800 Sobic003G042400 Sobic003G042400 Sobic010G007100--Sobic003G042400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.