Gene annotation
Transcriptome id Sobic.010G151900.3,Sobic.010G151900.2,Sobic.010G151900.5,Sobic.010G151900.4
Synonym Sb10g020410
Functional annotation ribonuclease P family protein, putative, expressed
UniProt A0A1W0VT94 , A0A194YJC4
Pfam PF01868
Panther DB PTHR13348
NCBI CDD -
KEGG Orthology K03538; POP4, ribonuclease P protein subunit POP4
Gene Ontology GO:0008033; tRNA processing GO:0006379mRNA cleavage GO:0006364rRNA processing GO:0004540ribonuclease activity GO:0003723RNA binding GO:0000172ribonuclease MRP complex


Orthologs (automatic annotation)
TAIR AT2G43190 : ribonuclease P family protein
RAP-DB (Rice) LOC_Os05g39530.1 : ribonuclease P family protein, putative, expressed
MaizeGDB (Corn) Zm00025a043953
Brachypodium -
Barley HORVU1Hr1G070440.27 , HORVU1Hr1G070440.26 , HORVU1Hr1G070440.25 , HORVU1Hr1G070440.24 , HORVU1Hr1G070440.23 , HORVU1Hr1G070440.22 , HORVU1Hr1G070440.21 , HORVU1Hr1G070440.20 , HORVU1Hr1G070440.8 , HORVU1Hr1G070440.9 , HORVU1Hr1G070440.4 , HORVU1Hr1G070440.5 , HORVU1Hr1G070440.6 , HORVU1Hr1G070440.7 , HORVU1Hr1G070440.1 , HORVU1Hr1G070440.2 , HORVU1Hr1G070440.3 , HORVU1Hr1G070440.18 , HORVU1Hr1G070440.19 , HORVU1Hr1G070440.16 , HORVU1Hr1G070440.17 , HORVU1Hr1G070440.14 , HORVU1Hr1G070440.15 , HORVU1Hr1G070440.12 , HORVU1Hr1G070440.13 , HORVU1Hr1G070440.10 , HORVU1Hr1G070440.11
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G253000 expressed protein -
2 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
3 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
4 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
5 Sobic.004G006900 OsFBX49 - F-box domain containing protein, expressed -
6 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
7 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
8 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
9 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
10 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
11 Sobic.003G435200 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
12 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
13 Sobic.010G116600 FHA domain containing protein, putative, expressed -
14 Sobic.005G116200 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed K10765: alkylated DNA repair protein alkB homolog 1
15 Sobic.002G310200 expressed protein -
16 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
17 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
18 Sobic.001G274700 - -
19 Sobic.010G118950 - -
20 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial


Gene co-expression network
sample Sobic010G151900 Sobic010G151900 Sobic006G253000 Sobic006G253000 Sobic010G151900--Sobic006G253000 Sobic003G006400 Sobic003G006400 Sobic010G151900--Sobic003G006400 Sobic010G166400 Sobic010G166400 Sobic010G151900--Sobic010G166400 Sobic001G441400 Sobic001G441400 Sobic010G151900--Sobic001G441400 Sobic004G006900 Sobic004G006900 Sobic010G151900--Sobic004G006900 Sobic003G187500 Sobic003G187500 Sobic010G151900--Sobic003G187500 Sobic008G014500 Sobic008G014500 Sobic010G151900--Sobic008G014500 Sobic006G195700 Sobic006G195700 Sobic010G151900--Sobic006G195700 Sobic005G027400 Sobic005G027400 Sobic010G151900--Sobic005G027400 Sobic006G253000--Sobic010G151900 Sobic007G075900 Sobic007G075900 Sobic006G253000--Sobic007G075900 Sobic006G253000--Sobic008G014500 Sobic006G253000--Sobic010G166400 Sobic001G452000 Sobic001G452000 Sobic006G253000--Sobic001G452000 Sobic001G522600 Sobic001G522600 Sobic006G253000--Sobic001G522600 Sobic004G353200 Sobic004G353200 Sobic006G253000--Sobic004G353200 Sobic010G116600 Sobic010G116600 Sobic006G253000--Sobic010G116600 Sobic010G209400 Sobic010G209400 Sobic006G253000--Sobic010G209400 Sobic006G208500 Sobic006G208500 Sobic003G006400--Sobic006G208500 Sobic006G200700 Sobic006G200700 Sobic003G006400--Sobic006G200700 Sobic002G275600 Sobic002G275600 Sobic003G006400--Sobic002G275600 Sobic001G369000 Sobic001G369000 Sobic003G006400--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic003G006400--Sobic006G138000 Sobic003G006400--Sobic010G151900 Sobic001G145400 Sobic001G145400 Sobic003G006400--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G006400--Sobic006G077200 Sobic010G007100 Sobic010G007100 Sobic003G006400--Sobic010G007100 Sobic010G166400--Sobic008G014500 Sobic010G166400--Sobic010G116600 Sobic010G059500 Sobic010G059500 Sobic010G166400--Sobic010G059500 Sobic007G207200 Sobic007G207200 Sobic010G166400--Sobic007G207200 Sobic003G093800 Sobic003G093800 Sobic010G166400--Sobic003G093800 Sobic007G042400 Sobic007G042400 Sobic010G166400--Sobic007G042400 Sobic002G317200 Sobic002G317200 Sobic010G166400--Sobic002G317200 Sobic009G177500 Sobic009G177500 Sobic010G166400--Sobic009G177500 Sobic009G084900 Sobic009G084900 Sobic010G166400--Sobic009G084900 Sobic001G451400 Sobic001G451400 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic001G441400--Sobic005G027400 Sobic009G165700 Sobic009G165700 Sobic001G441400--Sobic009G165700 Sobic001G363500 Sobic001G363500 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic002G299700 Sobic002G299700 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic004G006900--Sobic005G027400 Sobic004G006900--Sobic001G441400 Sobic002G309600 Sobic002G309600 Sobic004G006900--Sobic002G309600 Sobic010G143800 Sobic010G143800 Sobic004G006900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic004G006900--Sobic004G263600 Sobic004G006900--Sobic002G299700 Sobic004G006900--Sobic002G275600 Sobic004G006900--Sobic001G451400 Sobic004G006900--Sobic006G252900 Sobic010G053800 Sobic010G053800 Sobic003G187500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic003G187500--Sobic004G072100 Sobic007G132100 Sobic007G132100 Sobic003G187500--Sobic007G132100 Sobic002G310200 Sobic002G310200 Sobic003G187500--Sobic002G310200 Sobic010G275500 Sobic010G275500 Sobic003G187500--Sobic010G275500 Sobic008G047800 Sobic008G047800 Sobic003G187500--Sobic008G047800 Sobic004G039600 Sobic004G039600 Sobic003G187500--Sobic004G039600 Sobic006G012500 Sobic006G012500 Sobic003G187500--Sobic006G012500 Sobic010G236400 Sobic010G236400 Sobic003G187500--Sobic010G236400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic008G014500--Sobic006G200700 Sobic008G014500--Sobic010G236400 Sobic008G014500--Sobic002G275600 Sobic008G014500--Sobic007G075900 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic008G014500--Sobic001G522600 Sobic010G204400 Sobic010G204400 Sobic006G195700--Sobic010G204400 Sobic009G245800 Sobic009G245800 Sobic006G195700--Sobic009G245800 Sobic006G195700--Sobic010G236400 Sobic002G056701 Sobic002G056701 Sobic006G195700--Sobic002G056701 Sobic006G195700--Sobic002G310200 Sobic002G260400 Sobic002G260400 Sobic006G195700--Sobic002G260400 Sobic010G245000 Sobic010G245000 Sobic006G195700--Sobic010G245000 Sobic006G173100 Sobic006G173100 Sobic006G195700--Sobic006G173100 Sobic006G195700--Sobic003G187500 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic005G027400--Sobic008G047800 Sobic005G027400--Sobic004G006900
Octagon: transcription factors


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