Gene annotation
Transcriptome id Sobic.006G253000.1
Synonym
Functional annotation expressed protein
UniProt C5Y9N0
Pfam -
Panther DB PTHR22939:SF96 PTHR22939
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os05g06814.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G151900 ribonuclease P family protein, putative, expressed K03538: POP4, ribonuclease P protein subunit POP4
2 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
3 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
4 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
5 Sobic.001G452000 heat shock protein DnaJ, putative, expressed K03686: molecular chaperone DnaJ
6 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
7 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
8 Sobic.010G116600 FHA domain containing protein, putative, expressed -
9 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
10 Sobic.001G091400 expressed protein -
11 Sobic.004G084700 - -
12 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
13 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
14 Sobic.003G435200 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
15 Sobic.003G102400 expressed protein -
16 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
17 Sobic.001G260400 transcription initiation factor, putative, expressed K03136: TFIIE1, GTF2E1, TFA1, transcription initiation factor TFIIE subunit alpha
18 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
19 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
20 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43


Gene co-expression network
sample Sobic006G253000 Sobic006G253000 Sobic010G151900 Sobic010G151900 Sobic006G253000--Sobic010G151900 Sobic007G075900 Sobic007G075900 Sobic006G253000--Sobic007G075900 Sobic008G014500 Sobic008G014500 Sobic006G253000--Sobic008G014500 Sobic010G166400 Sobic010G166400 Sobic006G253000--Sobic010G166400 Sobic001G452000 Sobic001G452000 Sobic006G253000--Sobic001G452000 Sobic001G522600 Sobic001G522600 Sobic006G253000--Sobic001G522600 Sobic004G353200 Sobic004G353200 Sobic006G253000--Sobic004G353200 Sobic010G116600 Sobic010G116600 Sobic006G253000--Sobic010G116600 Sobic010G209400 Sobic010G209400 Sobic006G253000--Sobic010G209400 Sobic010G151900--Sobic006G253000 Sobic003G006400 Sobic003G006400 Sobic010G151900--Sobic003G006400 Sobic010G151900--Sobic010G166400 Sobic001G441400 Sobic001G441400 Sobic010G151900--Sobic001G441400 Sobic004G006900 Sobic004G006900 Sobic010G151900--Sobic004G006900 Sobic003G187500 Sobic003G187500 Sobic010G151900--Sobic003G187500 Sobic010G151900--Sobic008G014500 Sobic006G195700 Sobic006G195700 Sobic010G151900--Sobic006G195700 Sobic005G027400 Sobic005G027400 Sobic010G151900--Sobic005G027400 Sobic007G075900--Sobic004G353200 Sobic001G392300 Sobic001G392300 Sobic007G075900--Sobic001G392300 Sobic009G177500 Sobic009G177500 Sobic007G075900--Sobic009G177500 Sobic009G044800 Sobic009G044800 Sobic007G075900--Sobic009G044800 Sobic007G075900--Sobic008G014500 Sobic004G274200 Sobic004G274200 Sobic007G075900--Sobic004G274200 Sobic003G401100 Sobic003G401100 Sobic007G075900--Sobic003G401100 Sobic004G084300 Sobic004G084300 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic008G014500--Sobic007G075900 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic008G014500--Sobic001G522600 Sobic010G166400--Sobic008G014500 Sobic010G166400--Sobic010G116600 Sobic010G059500 Sobic010G059500 Sobic010G166400--Sobic010G059500 Sobic007G207200 Sobic007G207200 Sobic010G166400--Sobic007G207200 Sobic003G093800 Sobic003G093800 Sobic010G166400--Sobic003G093800 Sobic007G042400 Sobic007G042400 Sobic010G166400--Sobic007G042400 Sobic002G317200 Sobic002G317200 Sobic010G166400--Sobic002G317200 Sobic010G166400--Sobic009G177500 Sobic009G084900 Sobic009G084900 Sobic010G166400--Sobic009G084900 Sobic004G084700 Sobic004G084700 Sobic001G452000--Sobic004G084700 Sobic005G118600 Sobic005G118600 Sobic001G452000--Sobic005G118600 Sobic001G452000--Sobic001G441400 Sobic001G452000--Sobic010G236400 Sobic003G445400 Sobic003G445400 Sobic001G452000--Sobic003G445400 Sobic004G067700 Sobic004G067700 Sobic001G452000--Sobic004G067700 Sobic001G452000--Sobic001G091400 Sobic008G084700 Sobic008G084700 Sobic001G452000--Sobic008G084700 Sobic002G260400 Sobic002G260400 Sobic001G452000--Sobic002G260400 Sobic007G061000 Sobic007G061000 Sobic001G522600--Sobic007G061000 Sobic001G522600--Sobic001G392300 Sobic008G002500 Sobic008G002500 Sobic001G522600--Sobic008G002500 Sobic001G522600--Sobic010G236400 Sobic009G095100 Sobic009G095100 Sobic001G522600--Sobic009G095100 Sobic001G522600--Sobic008G014500 Sobic001G522600--Sobic006G200700 Sobic001G522600--Sobic009G044800 Sobic007G183900 Sobic007G183900 Sobic001G522600--Sobic007G183900 Sobic006G200600 Sobic006G200600 Sobic004G353200--Sobic006G200600 Sobic004G353200--Sobic001G392300 Sobic004G353200--Sobic007G075900 Sobic001G007000 Sobic001G007000 Sobic004G353200--Sobic001G007000 Sobic004G066200 Sobic004G066200 Sobic004G353200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic004G353200--Sobic008G047800 Sobic004G353200--Sobic004G274200 Sobic010G053800 Sobic010G053800 Sobic004G353200--Sobic010G053800 Sobic003G102400 Sobic003G102400 Sobic004G353200--Sobic003G102400 Sobic002G071500 Sobic002G071500 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic010G116600--Sobic003G093800 Sobic010G116600--Sobic009G044800 Sobic004G072100 Sobic004G072100 Sobic010G116600--Sobic004G072100 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic003G408600 Sobic003G408600 Sobic010G116600--Sobic003G408600 Sobic010G116600--Sobic010G053800 Sobic010G209400--Sobic010G236400 Sobic010G209400--Sobic004G084300 Sobic009G210500 Sobic009G210500 Sobic010G209400--Sobic009G210500 Sobic001G511500 Sobic001G511500 Sobic010G209400--Sobic001G511500 Sobic001G542700 Sobic001G542700 Sobic010G209400--Sobic001G542700 Sobic009G040600 Sobic009G040600 Sobic010G209400--Sobic009G040600 Sobic003G038500 Sobic003G038500 Sobic010G209400--Sobic003G038500 Sobic008G131000 Sobic008G131000 Sobic010G209400--Sobic008G131000 Sobic010G209400--Sobic008G047800
Octagon: transcription factors


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