Gene annotation
Transcriptome id Sobic.010G166400.4,Sobic.010G166400.6,Sobic.010G166400.1,Sobic.010G166400.3,Sobic.010G166400.5,Sobic.010G166400.2
Synonym Sb10g021970
Functional annotation initiator tRNA phosphoribosyl transferase family protein, putative, expressed
UniProt A0A1W0VTF0 , A0A194YJL7
Pfam PF04179
Panther DB PTHR31811 PTHR31811:SF0 PTHR31811:SF0 PTHR31811
NCBI CDD KOG2634; Initiator tRNA phosphoribosyl-transferase
KEGG Orthology K15463; tRNA A64-2'-O-ribosylphosphate transferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G40570 : initiator tRNA phosphoribosyl transferase family protein
RAP-DB (Rice) LOC_Os06g36170.1 : initiator tRNA phosphoribosyl transferase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a051058
Brachypodium PNT75796 , PNT75797 , PNT75794 , PNT75795 , PNT75792 , PNT75793 , PNT75798 , PNT75799 , KQK11201 , KQK11203 , KQK11202 , PNT75802 , PNT75800 , PNT75801 , PNT73455 , KQK18010
Barley HORVU7Hr1G088570.20 , HORVU7Hr1G088570.21 , HORVU7Hr1G088570.22 , HORVU7Hr1G088570.23 , HORVU7Hr1G088570.5 , HORVU7Hr1G088570.4 , HORVU7Hr1G088570.7 , HORVU7Hr1G088570.6 , HORVU7Hr1G088570.1 , HORVU7Hr1G088570.3 , HORVU7Hr1G088570.2 , HORVU7Hr1G088570.9 , HORVU7Hr1G088570.8 , HORVU7Hr1G088570.11 , HORVU7Hr1G088570.10 , HORVU7Hr1G088570.13 , HORVU7Hr1G088570.12 , HORVU7Hr1G088570.15 , HORVU7Hr1G088570.14 , HORVU7Hr1G088570.17 , HORVU7Hr1G088570.16 , HORVU7Hr1G088570.19 , HORVU7Hr1G088570.18
Wheat TraesCS7A02G356400 , TraesCS7A02G356400 , TraesCS7A02G356400 , TraesCS7B02G271300 , TraesCS7B02G271300 , TraesCS7B02G271300 , TraesCS7B02G271300 , TraesCS7D02G366300 , TraesCS7D02G366300 , TraesCS7D02G366300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
2 Sobic.010G116600 FHA domain containing protein, putative, expressed -
3 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
4 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
5 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
6 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
7 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
8 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
9 Sobic.009G084900 expressed protein -
10 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
11 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
12 Sobic.006G096900 expressed protein -
13 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
14 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
15 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
16 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
17 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
18 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
19 Sobic.007G103600 protein of unknown function DUF1296 domain containing protein, expressed -
20 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein


Gene co-expression network
sample Sobic010G166400 Sobic010G166400 Sobic008G014500 Sobic008G014500 Sobic010G166400--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic010G166400--Sobic010G116600 Sobic010G059500 Sobic010G059500 Sobic010G166400--Sobic010G059500 Sobic007G207200 Sobic007G207200 Sobic010G166400--Sobic007G207200 Sobic003G093800 Sobic003G093800 Sobic010G166400--Sobic003G093800 Sobic007G042400 Sobic007G042400 Sobic010G166400--Sobic007G042400 Sobic002G317200 Sobic002G317200 Sobic010G166400--Sobic002G317200 Sobic009G177500 Sobic009G177500 Sobic010G166400--Sobic009G177500 Sobic009G084900 Sobic009G084900 Sobic010G166400--Sobic009G084900 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic002G071500 Sobic002G071500 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic010G116600--Sobic003G093800 Sobic009G044800 Sobic009G044800 Sobic010G116600--Sobic009G044800 Sobic004G072100 Sobic004G072100 Sobic010G116600--Sobic004G072100 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic003G408600 Sobic003G408600 Sobic010G116600--Sobic003G408600 Sobic010G053800 Sobic010G053800 Sobic010G116600--Sobic010G053800 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic001G145400 Sobic001G145400 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic006G077200 Sobic006G077200 Sobic010G059500--Sobic006G077200 Sobic001G493200 Sobic001G493200 Sobic010G059500--Sobic001G493200 Sobic001G166600 Sobic001G166600 Sobic007G207200--Sobic001G166600 Sobic001G219600 Sobic001G219600 Sobic007G207200--Sobic001G219600 Sobic007G207200--Sobic002G317200 Sobic007G207200--Sobic010G166400 Sobic001G407700 Sobic001G407700 Sobic007G207200--Sobic001G407700 Sobic007G207200--Sobic009G084900 Sobic009G056200 Sobic009G056200 Sobic007G207200--Sobic009G056200 Sobic009G047200 Sobic009G047200 Sobic007G207200--Sobic009G047200 Sobic007G207200--Sobic010G116600 Sobic003G093800--Sobic010G116600 Sobic001G065000 Sobic001G065000 Sobic003G093800--Sobic001G065000 Sobic003G093800--Sobic003G408600 Sobic001G536400 Sobic001G536400 Sobic003G093800--Sobic001G536400 Sobic001G058700 Sobic001G058700 Sobic003G093800--Sobic001G058700 Sobic003G093800--Sobic002G299700 Sobic003G093800--Sobic009G044800 Sobic003G093800--Sobic002G071500 Sobic009G249700 Sobic009G249700 Sobic003G093800--Sobic009G249700 Sobic003G444800 Sobic003G444800 Sobic007G042400--Sobic003G444800 Sobic007G042400--Sobic006G234700 Sobic007G042400--Sobic009G084900 Sobic003G152400 Sobic003G152400 Sobic007G042400--Sobic003G152400 Sobic007G042400--Sobic010G059500 Sobic009G247400 Sobic009G247400 Sobic007G042400--Sobic009G247400 Sobic003G059750 Sobic003G059750 Sobic007G042400--Sobic003G059750 Sobic004G357100 Sobic004G357100 Sobic007G042400--Sobic004G357100 Sobic001G311500 Sobic001G311500 Sobic007G042400--Sobic001G311500 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic002G317200--Sobic001G219600 Sobic004G314000 Sobic004G314000 Sobic002G317200--Sobic004G314000 Sobic001G433800 Sobic001G433800 Sobic002G317200--Sobic001G433800 Sobic003G095900 Sobic003G095900 Sobic002G317200--Sobic003G095900 Sobic004G242400 Sobic004G242400 Sobic002G317200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic002G317200--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic002G317200--Sobic005G112300 Sobic009G260500 Sobic009G260500 Sobic002G317200--Sobic009G260500 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic009G177500--Sobic005G112300 Sobic004G140600 Sobic004G140600 Sobic009G177500--Sobic004G140600 Sobic008G047800 Sobic008G047800 Sobic009G177500--Sobic008G047800 Sobic010G112100 Sobic010G112100 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic001G392300 Sobic001G392300 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic009G084900--Sobic001G433800 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100
Octagon: transcription factors


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