Gene annotation
Transcriptome id Sobic.006G200700.2,Sobic.006G200700.1,Sobic.006G200700.3
Synonym Sb06g027260
Functional annotation elongation factor Tu, putative, expressed
UniProt C5YF29 , C5YF35 , A0A1Z5RF86
Pfam PF03143 PF00009 PF01926
Panther DB PTHR23115 PTHR23115:SF134
NCBI CDD KOG0458; Elongation factor 1 alpha
KEGG Orthology K14416; elongation factor 1 alpha-like protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G10630 : Translation elongation factor EF1A/initiation factor IF2gamma family protein
RAP-DB (Rice) LOC_Os01g02720.2,LOC_Os01g02720.1 : elongation factor Tu, putative, expressed
MaizeGDB (Corn) Zm00025a056913
Brachypodium KQJ84340
Barley HORVU2Hr1G102800.11 , HORVU2Hr1G102800.10 , HORVU2Hr1G102800.9 , HORVU2Hr1G102800.8 , HORVU2Hr1G102800.5 , HORVU2Hr1G102800.4 , HORVU2Hr1G102800.7 , HORVU2Hr1G102800.6 , HORVU2Hr1G102800.1 , HORVU2Hr1G102800.3 , HORVU2Hr1G102800.2 , HORVU2Hr1G102800.12
Wheat TraesCS2A02G444100 , TraesCS2A02G444100 , TraesCS2A02G444100 , TraesCS2A02G444100 , TraesCS2A02G444100 , TraesCS2A02G444100 , TraesCS2D02G443300 , TraesCS2D02G443300 , TraesCS2D02G443300 , TraesCS2D02G443300 , TraesCS2D02G443300 , TraesCS2B02G465300 , TraesCS2B02G465300 , TraesCS2B02G465300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
2 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
3 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
4 Sobic.010G116600 FHA domain containing protein, putative, expressed -
5 Sobic.006G204800 APO, putative, expressed -
6 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
7 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
8 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
9 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
10 Sobic.004G135400 expressed protein -
11 Sobic.007G183900 ubiquitin family protein, putative, expressed -
12 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
13 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
14 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
15 Sobic.002G295500 expressed protein -
16 Sobic.010G118950 - -
17 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
18 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
19 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
20 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7


Gene co-expression network
sample Sobic006G200700 Sobic006G200700 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic001G522600 Sobic001G522600 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800 Sobic004G135400 Sobic004G135400 Sobic006G208500--Sobic004G135400 Sobic006G208500--Sobic003G006400 Sobic006G136400 Sobic006G136400 Sobic006G208500--Sobic006G136400 Sobic009G245800 Sobic009G245800 Sobic006G208500--Sobic009G245800 Sobic006G126100 Sobic006G126100 Sobic006G208500--Sobic006G126100 Sobic004G039600 Sobic004G039600 Sobic006G208500--Sobic004G039600 Sobic006G208500--Sobic006G200700 Sobic001G369000 Sobic001G369000 Sobic006G208500--Sobic001G369000 Sobic006G208500--Sobic004G277200 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic008G014500--Sobic001G522600 Sobic002G071500 Sobic002G071500 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic003G093800 Sobic003G093800 Sobic010G116600--Sobic003G093800 Sobic010G116600--Sobic009G044800 Sobic004G072100 Sobic004G072100 Sobic010G116600--Sobic004G072100 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic003G408600 Sobic003G408600 Sobic010G116600--Sobic003G408600 Sobic010G053800 Sobic010G053800 Sobic010G116600--Sobic010G053800 Sobic006G204800--Sobic010G236400 Sobic006G204800--Sobic006G200700 Sobic006G195700 Sobic006G195700 Sobic006G204800--Sobic006G195700 Sobic001G392300 Sobic001G392300 Sobic006G204800--Sobic001G392300 Sobic006G204800--Sobic007G075900 Sobic008G112800 Sobic008G112800 Sobic006G204800--Sobic008G112800 Sobic006G204800--Sobic001G522600 Sobic006G204800--Sobic004G353000 Sobic004G084300 Sobic004G084300 Sobic006G204800--Sobic004G084300 Sobic007G061000 Sobic007G061000 Sobic001G522600--Sobic007G061000 Sobic001G522600--Sobic001G392300 Sobic008G002500 Sobic008G002500 Sobic001G522600--Sobic008G002500 Sobic001G522600--Sobic010G236400 Sobic009G095100 Sobic009G095100 Sobic001G522600--Sobic009G095100 Sobic001G522600--Sobic008G014500 Sobic001G522600--Sobic006G200700 Sobic001G522600--Sobic009G044800 Sobic001G522600--Sobic007G183900 Sobic003G006400--Sobic006G208500 Sobic003G006400--Sobic006G200700 Sobic003G006400--Sobic002G275600 Sobic003G006400--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic003G006400--Sobic006G138000 Sobic010G151900 Sobic010G151900 Sobic003G006400--Sobic010G151900 Sobic001G145400 Sobic001G145400 Sobic003G006400--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G006400--Sobic006G077200 Sobic010G007100 Sobic010G007100 Sobic003G006400--Sobic010G007100 Sobic004G277200--Sobic004G135400 Sobic008G099800 Sobic008G099800 Sobic004G277200--Sobic008G099800 Sobic010G118950 Sobic010G118950 Sobic004G277200--Sobic010G118950 Sobic007G225100 Sobic007G225100 Sobic004G277200--Sobic007G225100 Sobic003G104000 Sobic003G104000 Sobic004G277200--Sobic003G104000 Sobic004G277200--Sobic006G208500 Sobic003G332500 Sobic003G332500 Sobic004G277200--Sobic003G332500 Sobic004G277200--Sobic006G200700 Sobic009G201700 Sobic009G201700 Sobic004G277200--Sobic009G201700 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic009G044800--Sobic007G183900
Octagon: transcription factors


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