Gene annotation
Transcriptome id Sobic.008G103300.1
Synonym Sb08g015540, VPS26A
Functional annotation vacuolar protein sorting-associated protein 26, putative, expressed
UniProt C5YNX3 , Q9XEQ3
Pfam PF03643
Panther DB PTHR12233 PTHR12233:SF6
NCBI CDD -
KEGG Orthology K18466; vacuolar protein sorting-associated protein 26
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53530 : vacuolar protein sorting 26A
RAP-DB (Rice) LOC_Os12g31640.2 : vacuolar protein sorting-associated protein 26, putative, expressed
MaizeGDB (Corn) Zm00025a054202
Brachypodium KQJ86649 , KQJ87689 , KQJ87690
Barley HORVU4Hr1G031010.5 , HORVU4Hr1G031010.4 , HORVU4Hr1G031010.7 , HORVU4Hr1G031010.6 , HORVU4Hr1G031010.1 , HORVU4Hr1G031010.3 , HORVU4Hr1G031010.2
Wheat TraesCS4D02G148600 , TraesCS4A02G164600 , TraesCS4A02G164600 , TraesCS4D02G148600 , TraesCSU02G067300
Populus PNT19120 , PNT19119


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cDNA sequences
Sobic.008G103300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
2 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
3 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
4 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
5 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
6 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
7 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
8 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
9 Sobic.002G295500 expressed protein -
10 Sobic.010G228500 rab geranylgeranyl transferase like protein, putative, expressed K14050: geranylgeranyl transferase type-2 subunit alpha
11 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
12 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
13 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
14 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
15 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
16 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
18 Sobic.001G482900 glycosyl transferase, group 1 domain containing protein, expressed K03842: beta-1,4-mannosyltransferase
19 Sobic.002G111600 expressed protein -
20 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic008G103300 Sobic008G103300 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic002G371700 Sobic002G371700 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic002G020700 Sobic002G020700 Sobic008G055900--Sobic002G020700 Sobic010G223300 Sobic010G223300 Sobic008G055900--Sobic010G223300 Sobic008G055900--Sobic008G103300 Sobic010G020400 Sobic010G020400 Sobic008G055900--Sobic010G020400 Sobic006G136400 Sobic006G136400 Sobic008G055900--Sobic006G136400 Sobic001G447300 Sobic001G447300 Sobic008G055900--Sobic001G447300 Sobic008G085700 Sobic008G085700 Sobic008G055900--Sobic008G085700 Sobic006G056200 Sobic006G056200 Sobic008G055900--Sobic006G056200 Sobic008G129600 Sobic008G129600 Sobic008G055900--Sobic008G129600 Sobic002G371700--Sobic008G103300 Sobic004G053500 Sobic004G053500 Sobic002G371700--Sobic004G053500 Sobic010G059500 Sobic010G059500 Sobic002G371700--Sobic010G059500 Sobic002G142900 Sobic002G142900 Sobic002G371700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic001G087600 Sobic001G087600 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic003G046300--Sobic008G103300 Sobic003G046300--Sobic002G142900 Sobic003G046300--Sobic002G371700 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic001G487100 Sobic001G487100 Sobic003G046300--Sobic001G487100 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G132000--Sobic003G046300 Sobic003G132000--Sobic008G103300 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic003G132000--Sobic002G371700 Sobic003G132000--Sobic003G363700 Sobic005G074500--Sobic008G103300 Sobic003G312200 Sobic003G312200 Sobic005G074500--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic005G074500--Sobic001G206900 Sobic001G449900 Sobic001G449900 Sobic005G074500--Sobic001G449900 Sobic003G337300 Sobic003G337300 Sobic005G074500--Sobic003G337300 Sobic001G426100 Sobic001G426100 Sobic005G074500--Sobic001G426100 Sobic004G323700 Sobic004G323700 Sobic005G074500--Sobic004G323700 Sobic001G431000 Sobic001G431000 Sobic005G074500--Sobic001G431000 Sobic010G020300 Sobic010G020300 Sobic005G074500--Sobic010G020300 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic001G114500--Sobic008G103300 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic001G522600 Sobic001G522600 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic003G104000 Sobic003G104000 Sobic002G295500--Sobic003G104000 Sobic002G295500--Sobic009G044800 Sobic003G416700 Sobic003G416700 Sobic002G295500--Sobic003G416700 Sobic006G224800 Sobic006G224800 Sobic002G295500--Sobic006G224800 Sobic002G295500--Sobic004G353000 Sobic007G183900 Sobic007G183900 Sobic002G295500--Sobic007G183900 Sobic006G240100 Sobic006G240100 Sobic002G295500--Sobic006G240100 Sobic007G132100 Sobic007G132100 Sobic002G295500--Sobic007G132100 Sobic002G295500--Sobic006G200700
Octagon: transcription factors


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