Gene annotation
Transcriptome id Sobic.010G228500.1
Synonym ATRGTA1, Sb10g027180, RGTA1
Functional annotation rab geranylgeranyl transferase like protein, putative, expressed
UniProt C5Z7U1
Pfam PF01239
Panther DB PTHR11129 PTHR11129:SF2
NCBI CDD KOG0529; Protein geranylgeranyltransferase type II, alpha subunit
KEGG Orthology K14050; geranylgeranyl transferase type-2 subunit alpha
Gene Ontology GO:0018342; protein prenylation GO:0008318protein prenyltransferase activity


Orthologs (automatic annotation)
TAIR AT4G24490 : RAB geranylgeranyl transferase alpha subunit 1
RAP-DB (Rice) LOC_Os06g46380.1 : rab geranylgeranyl transferase like protein, putative, expressed
MaizeGDB (Corn) Zm00025a018045 , Zm00025a041912
Brachypodium KQK17116
Barley HORVU7Hr1G106380.5 , HORVU7Hr1G106380.3 , HORVU7Hr1G106380.2 , HORVU7Hr1G106380.1 , HORVU7Hr1G106380.6 , HORVU7Hr1G106380.4
Wheat TraesCS7A02G462800 , TraesCS7D02G450700 , TraesCS7B02G363600
Populus -


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cDNA sequences
Sobic.010G228500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G308500 peptide-Nasparagine amidase, putative, expressed K01456: E3.5.1.52, NGLY1, peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase
2 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
3 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
4 Sobic.010G219000 tRNA pseudouridine synthase family protein, putative, expressed -
5 Sobic.008G099800 expressed protein -
6 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
7 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
8 Sobic.002G405500 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11841: USP10, ubiquitin carboxyl-terminal hydrolase 10
9 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
10 Sobic.002G111600 expressed protein -
11 Sobic.001G382600 expressed protein -
12 Sobic.008G164600 expressed protein -
13 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
14 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
15 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
16 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
17 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
18 Sobic.004G135400 expressed protein -
19 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
20 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit


Gene co-expression network
sample Sobic010G228500 Sobic010G228500 Sobic002G308500 Sobic002G308500 Sobic010G228500--Sobic002G308500 Sobic004G277200 Sobic004G277200 Sobic010G228500--Sobic004G277200 Sobic008G103300 Sobic008G103300 Sobic010G228500--Sobic008G103300 Sobic010G219000 Sobic010G219000 Sobic010G228500--Sobic010G219000 Sobic008G099800 Sobic008G099800 Sobic010G228500--Sobic008G099800 Sobic002G189400 Sobic002G189400 Sobic010G228500--Sobic002G189400 Sobic004G339100 Sobic004G339100 Sobic010G228500--Sobic004G339100 Sobic002G405500 Sobic002G405500 Sobic010G228500--Sobic002G405500 Sobic007G225100 Sobic007G225100 Sobic010G228500--Sobic007G225100 Sobic008G124800 Sobic008G124800 Sobic002G308500--Sobic008G124800 Sobic003G233400 Sobic003G233400 Sobic002G308500--Sobic003G233400 Sobic002G308500--Sobic008G099800 Sobic002G308500--Sobic010G228500 Sobic001G404600 Sobic001G404600 Sobic002G308500--Sobic001G404600 Sobic007G019300 Sobic007G019300 Sobic002G308500--Sobic007G019300 Sobic001G137000 Sobic001G137000 Sobic002G308500--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic002G308500--Sobic003G312100 Sobic001G426600 Sobic001G426600 Sobic002G308500--Sobic001G426600 Sobic004G135400 Sobic004G135400 Sobic004G277200--Sobic004G135400 Sobic004G277200--Sobic008G099800 Sobic010G118950 Sobic010G118950 Sobic004G277200--Sobic010G118950 Sobic004G277200--Sobic007G225100 Sobic003G104000 Sobic003G104000 Sobic004G277200--Sobic003G104000 Sobic006G208500 Sobic006G208500 Sobic004G277200--Sobic006G208500 Sobic003G332500 Sobic003G332500 Sobic004G277200--Sobic003G332500 Sobic006G200700 Sobic006G200700 Sobic004G277200--Sobic006G200700 Sobic009G201700 Sobic009G201700 Sobic004G277200--Sobic009G201700 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic002G371700 Sobic002G371700 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic010G219000--Sobic002G405500 Sobic010G219000--Sobic010G228500 Sobic010G266500 Sobic010G266500 Sobic010G219000--Sobic010G266500 Sobic001G023800 Sobic001G023800 Sobic010G219000--Sobic001G023800 Sobic010G219000--Sobic006G200700 Sobic010G219000--Sobic002G295500 Sobic010G219000--Sobic004G277200 Sobic008G164600 Sobic008G164600 Sobic010G219000--Sobic008G164600 Sobic010G219000--Sobic008G099800 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic008G099800--Sobic001G534800 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic008G099800--Sobic001G065000 Sobic002G189400--Sobic010G228500 Sobic002G189400--Sobic004G339100 Sobic006G083600 Sobic006G083600 Sobic002G189400--Sobic006G083600 Sobic009G148300 Sobic009G148300 Sobic002G189400--Sobic009G148300 Sobic007G202600 Sobic007G202600 Sobic002G189400--Sobic007G202600 Sobic002G189400--Sobic004G113400 Sobic004G127700 Sobic004G127700 Sobic002G189400--Sobic004G127700 Sobic002G189400--Sobic008G099800 Sobic002G111600 Sobic002G111600 Sobic002G189400--Sobic002G111600 Sobic004G339100--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G339100--Sobic009G010600 Sobic004G329400 Sobic004G329400 Sobic004G339100--Sobic004G329400 Sobic007G024700 Sobic007G024700 Sobic004G339100--Sobic007G024700 Sobic003G287100 Sobic003G287100 Sobic004G339100--Sobic003G287100 Sobic004G339100--Sobic008G099800 Sobic004G339100--Sobic001G534800 Sobic004G339100--Sobic004G135400 Sobic004G339100--Sobic004G277200 Sobic006G080400 Sobic006G080400 Sobic002G405500--Sobic006G080400 Sobic007G077900 Sobic007G077900 Sobic002G405500--Sobic007G077900 Sobic002G405500--Sobic010G219000 Sobic002G405500--Sobic007G019300 Sobic004G155600 Sobic004G155600 Sobic002G405500--Sobic004G155600 Sobic004G223300 Sobic004G223300 Sobic002G405500--Sobic004G223300 Sobic001G536000 Sobic001G536000 Sobic002G405500--Sobic001G536000 Sobic002G405500--Sobic010G228500 Sobic001G453000 Sobic001G453000 Sobic002G405500--Sobic001G453000 Sobic007G225100--Sobic004G277200 Sobic001G313700 Sobic001G313700 Sobic007G225100--Sobic001G313700 Sobic002G299000 Sobic002G299000 Sobic007G225100--Sobic002G299000 Sobic003G337300 Sobic003G337300 Sobic007G225100--Sobic003G337300 Sobic002G366400 Sobic002G366400 Sobic007G225100--Sobic002G366400 Sobic007G225100--Sobic003G104000 Sobic007G225100--Sobic008G099800 Sobic001G124200 Sobic001G124200 Sobic007G225100--Sobic001G124200 Sobic002G045600 Sobic002G045600 Sobic007G225100--Sobic002G045600
Octagon: transcription factors


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