Gene annotation
Transcriptome id Sobic.002G405500.4,Sobic.002G405500.3
Synonym Sb02g041970, UBP24
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1W0W7P6 , A0A1W0W7P3
Pfam PF13423 PF00443
Panther DB PTHR24006 PTHR24006:SF529
NCBI CDD KOG1871; Ubiquitin-specific protease
KEGG Orthology K11841; USP10, ubiquitin carboxyl-terminal hydrolase 10
Gene Ontology GO:0016579; protein deubiquitination


Orthologs (automatic annotation)
TAIR AT4G30890 : ubiquitin-specific protease 24
RAP-DB (Rice) LOC_Os07g46660.1,LOC_Os07g46660.2 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015365 , Zm00025a049046
Brachypodium KQK14820
Barley HORVU2Hr1G022340.7 , HORVU2Hr1G022340.6 , HORVU2Hr1G022340.5 , HORVU2Hr1G022340.4 , HORVU2Hr1G022340.3 , HORVU2Hr1G022340.2 , HORVU2Hr1G022340.8
Wheat TraesCS2D02G129600 , TraesCS2D02G129600 , TraesCS2A02G127200 , TraesCS2A02G127200 , TraesCS2A02G127200 , TraesCS2D02G129600 , TraesCS2D02G129600 , TraesCS2D02G129600 , TraesCS2B02G149000 , TraesCS2B02G149000 , TraesCS2B02G149000
Populus -


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cDNA sequences
Sobic.002G405500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30
2 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
3 Sobic.010G219000 tRNA pseudouridine synthase family protein, putative, expressed -
4 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
5 Sobic.004G155600 dnaJ domain containing protein, expressed -
6 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
7 Sobic.001G536000 actin, putative, expressed K11340: ACTL6A, actin-like protein 6A
8 Sobic.010G228500 rab geranylgeranyl transferase like protein, putative, expressed K14050: geranylgeranyl transferase type-2 subunit alpha
9 Sobic.001G453000 no apical meristem protein, putative, expressed -
10 Sobic.003G294600 Homeobox domain containing protein, expressed -
11 Sobic.002G295500 expressed protein -
12 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
13 Sobic.004G135400 expressed protein -
14 Sobic.002G111600 expressed protein -
15 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
16 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
17 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
18 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
19 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
20 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein


Gene co-expression network
sample Sobic002G405500 Sobic002G405500 Sobic006G080400 Sobic006G080400 Sobic002G405500--Sobic006G080400 Sobic007G077900 Sobic007G077900 Sobic002G405500--Sobic007G077900 Sobic010G219000 Sobic010G219000 Sobic002G405500--Sobic010G219000 Sobic007G019300 Sobic007G019300 Sobic002G405500--Sobic007G019300 Sobic004G155600 Sobic004G155600 Sobic002G405500--Sobic004G155600 Sobic004G223300 Sobic004G223300 Sobic002G405500--Sobic004G223300 Sobic001G536000 Sobic001G536000 Sobic002G405500--Sobic001G536000 Sobic010G228500 Sobic010G228500 Sobic002G405500--Sobic010G228500 Sobic001G453000 Sobic001G453000 Sobic002G405500--Sobic001G453000 Sobic008G002500 Sobic008G002500 Sobic006G080400--Sobic008G002500 Sobic001G461400 Sobic001G461400 Sobic006G080400--Sobic001G461400 Sobic006G080400--Sobic004G155600 Sobic006G080400--Sobic002G405500 Sobic001G063700 Sobic001G063700 Sobic006G080400--Sobic001G063700 Sobic002G154000 Sobic002G154000 Sobic006G080400--Sobic002G154000 Sobic004G355800 Sobic004G355800 Sobic006G080400--Sobic004G355800 Sobic006G040800 Sobic006G040800 Sobic006G080400--Sobic006G040800 Sobic003G360400 Sobic003G360400 Sobic006G080400--Sobic003G360400 Sobic003G312100 Sobic003G312100 Sobic007G077900--Sobic003G312100 Sobic010G114900 Sobic010G114900 Sobic007G077900--Sobic010G114900 Sobic010G148932 Sobic010G148932 Sobic007G077900--Sobic010G148932 Sobic001G453400 Sobic001G453400 Sobic007G077900--Sobic001G453400 Sobic007G077900--Sobic002G405500 Sobic001G137000 Sobic001G137000 Sobic007G077900--Sobic001G137000 Sobic003G294600 Sobic003G294600 Sobic007G077900--Sobic003G294600 Sobic010G003400 Sobic010G003400 Sobic007G077900--Sobic010G003400 Sobic002G396500 Sobic002G396500 Sobic007G077900--Sobic002G396500 Sobic010G219000--Sobic002G405500 Sobic010G219000--Sobic010G228500 Sobic010G266500 Sobic010G266500 Sobic010G219000--Sobic010G266500 Sobic001G023800 Sobic001G023800 Sobic010G219000--Sobic001G023800 Sobic006G200700 Sobic006G200700 Sobic010G219000--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic010G219000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic010G219000--Sobic004G277200 Sobic008G164600 Sobic008G164600 Sobic010G219000--Sobic008G164600 Sobic008G099800 Sobic008G099800 Sobic010G219000--Sobic008G099800 Sobic007G019300--Sobic003G312100 Sobic008G124800 Sobic008G124800 Sobic007G019300--Sobic008G124800 Sobic003G233400 Sobic003G233400 Sobic007G019300--Sobic003G233400 Sobic001G426600 Sobic001G426600 Sobic007G019300--Sobic001G426600 Sobic003G314700 Sobic003G314700 Sobic007G019300--Sobic003G314700 Sobic001G170100 Sobic001G170100 Sobic007G019300--Sobic001G170100 Sobic010G147833 Sobic010G147833 Sobic007G019300--Sobic010G147833 Sobic004G260100 Sobic004G260100 Sobic007G019300--Sobic004G260100 Sobic009G084900 Sobic009G084900 Sobic007G019300--Sobic009G084900 Sobic006G014100 Sobic006G014100 Sobic004G155600--Sobic006G014100 Sobic006G270600 Sobic006G270600 Sobic004G155600--Sobic006G270600 Sobic004G155600--Sobic006G080400 Sobic004G155600--Sobic004G355800 Sobic002G425500 Sobic002G425500 Sobic004G155600--Sobic002G425500 Sobic006G118700 Sobic006G118700 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic002G145800 Sobic002G145800 Sobic004G155600--Sobic002G145800 Sobic001G002600 Sobic001G002600 Sobic004G155600--Sobic001G002600 Sobic004G147500 Sobic004G147500 Sobic004G223300--Sobic004G147500 Sobic002G340900 Sobic002G340900 Sobic004G223300--Sobic002G340900 Sobic001G065100 Sobic001G065100 Sobic004G223300--Sobic001G065100 Sobic002G042600 Sobic002G042600 Sobic004G223300--Sobic002G042600 Sobic004G223300--Sobic008G124800 Sobic005G062200 Sobic005G062200 Sobic004G223300--Sobic005G062200 Sobic003G039000 Sobic003G039000 Sobic004G223300--Sobic003G039000 Sobic001G382600 Sobic001G382600 Sobic004G223300--Sobic001G382600 Sobic002G401500 Sobic002G401500 Sobic004G223300--Sobic002G401500 Sobic004G034700 Sobic004G034700 Sobic001G536000--Sobic004G034700 Sobic009G142000 Sobic009G142000 Sobic001G536000--Sobic009G142000 Sobic001G536000--Sobic002G405500 Sobic001G451300 Sobic001G451300 Sobic001G536000--Sobic001G451300 Sobic001G239800 Sobic001G239800 Sobic001G536000--Sobic001G239800 Sobic001G536000--Sobic001G453000 Sobic003G375200 Sobic003G375200 Sobic001G536000--Sobic003G375200 Sobic006G112700 Sobic006G112700 Sobic001G536000--Sobic006G112700 Sobic001G536000--Sobic003G294600 Sobic002G308500 Sobic002G308500 Sobic010G228500--Sobic002G308500 Sobic010G228500--Sobic004G277200 Sobic008G103300 Sobic008G103300 Sobic010G228500--Sobic008G103300 Sobic010G228500--Sobic010G219000 Sobic010G228500--Sobic008G099800 Sobic002G189400 Sobic002G189400 Sobic010G228500--Sobic002G189400 Sobic004G339100 Sobic004G339100 Sobic010G228500--Sobic004G339100 Sobic010G228500--Sobic002G405500 Sobic007G225100 Sobic007G225100 Sobic010G228500--Sobic007G225100 Sobic007G168300 Sobic007G168300 Sobic001G453000--Sobic007G168300 Sobic001G453000--Sobic003G294600 Sobic001G453000--Sobic009G142000 Sobic003G042400 Sobic003G042400 Sobic001G453000--Sobic003G042400 Sobic007G155500 Sobic007G155500 Sobic001G453000--Sobic007G155500 Sobic001G453000--Sobic002G396500 Sobic004G085000 Sobic004G085000 Sobic001G453000--Sobic004G085000 Sobic002G179400 Sobic002G179400 Sobic001G453000--Sobic002G179400 Sobic001G453000--Sobic010G114900
Octagon: transcription factors


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