Gene annotation
Transcriptome id Sobic.001G488100.1
Synonym MOS3, NUP96, Sb01g045670, SAR3, PRE
Functional annotation OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed
UniProt C5WVX6
Pfam PF04096 PF12110
Panther DB PTHR23198 PTHR23198:SF0
NCBI CDD -
KEGG Orthology K14297; NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
Gene Ontology GO:0006810; transport GO:0005643nuclear pore


Orthologs (automatic annotation)
TAIR AT1G80680 : SUPPRESSOR OF AUXIN RESISTANCE 3
RAP-DB (Rice) LOC_Os03g07580.1 : OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a021104 , Zm00025a053327 , Zm00025a045643 , Zm00025a027785 , Zm00025a024471 , Zm00025a014504 , Zm00025a012529
Brachypodium KQK23395
Barley HORVU4Hr1G075390.2 , HORVU4Hr1G075390.3 , HORVU4Hr1G075390.1
Wheat TraesCS4A02G015800 , TraesCS4D02G287000 , TraesCS4B02G288200 , TraesCS4B02G288200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
2 Sobic.006G137700 Spc97 / Spc98 family protein, putative, expressed K16569: TUBGCP2, gamma-tubulin complex component 2
3 Sobic.002G405500 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11841: USP10, ubiquitin carboxyl-terminal hydrolase 10
4 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
5 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
6 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
7 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
8 Sobic.009G134900 PPR repeat domain containing protein, putative, expressed -
9 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.004G224600 expressed protein -
11 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
12 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
13 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
14 Sobic.004G343200 dehydrogenase, putative, expressed K00121: frmA, ADH5, S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
15 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
16 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
17 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
18 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
19 Sobic.006G188500 uncharacterized mscS family protein, putative, expressed -
20 Sobic.009G176700 expressed protein -


Gene co-expression network
sample Sobic001G488100 Sobic001G488100 Sobic004G315500 Sobic004G315500 Sobic001G488100--Sobic004G315500 Sobic006G137700 Sobic006G137700 Sobic001G488100--Sobic006G137700 Sobic002G405500 Sobic002G405500 Sobic001G488100--Sobic002G405500 Sobic009G234700 Sobic009G234700 Sobic001G488100--Sobic009G234700 Sobic010G188000 Sobic010G188000 Sobic001G488100--Sobic010G188000 Sobic006G002800 Sobic006G002800 Sobic001G488100--Sobic006G002800 Sobic001G373000 Sobic001G373000 Sobic001G488100--Sobic001G373000 Sobic009G134900 Sobic009G134900 Sobic001G488100--Sobic009G134900 Sobic008G160000 Sobic008G160000 Sobic001G488100--Sobic008G160000 Sobic004G315500--Sobic001G488100 Sobic005G010900 Sobic005G010900 Sobic004G315500--Sobic005G010900 Sobic004G315500--Sobic001G373000 Sobic004G315500--Sobic010G188000 Sobic004G322300 Sobic004G322300 Sobic004G315500--Sobic004G322300 Sobic004G315500--Sobic006G137700 Sobic001G239800 Sobic001G239800 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic003G123100 Sobic003G123100 Sobic004G315500--Sobic003G123100 Sobic006G137700--Sobic001G488100 Sobic006G137700--Sobic004G315500 Sobic006G137700--Sobic005G010900 Sobic002G327000 Sobic002G327000 Sobic006G137700--Sobic002G327000 Sobic010G114900 Sobic010G114900 Sobic006G137700--Sobic010G114900 Sobic004G149700 Sobic004G149700 Sobic006G137700--Sobic004G149700 Sobic006G137700--Sobic009G134900 Sobic006G137700--Sobic001G373000 Sobic007G051700 Sobic007G051700 Sobic006G137700--Sobic007G051700 Sobic006G080400 Sobic006G080400 Sobic002G405500--Sobic006G080400 Sobic007G077900 Sobic007G077900 Sobic002G405500--Sobic007G077900 Sobic010G219000 Sobic010G219000 Sobic002G405500--Sobic010G219000 Sobic007G019300 Sobic007G019300 Sobic002G405500--Sobic007G019300 Sobic004G155600 Sobic004G155600 Sobic002G405500--Sobic004G155600 Sobic004G223300 Sobic004G223300 Sobic002G405500--Sobic004G223300 Sobic001G536000 Sobic001G536000 Sobic002G405500--Sobic001G536000 Sobic010G228500 Sobic010G228500 Sobic002G405500--Sobic010G228500 Sobic001G453000 Sobic001G453000 Sobic002G405500--Sobic001G453000 Sobic004G256500 Sobic004G256500 Sobic009G234700--Sobic004G256500 Sobic004G131300 Sobic004G131300 Sobic009G234700--Sobic004G131300 Sobic001G145400 Sobic001G145400 Sobic009G234700--Sobic001G145400 Sobic004G053500 Sobic004G053500 Sobic009G234700--Sobic004G053500 Sobic009G234700--Sobic006G002800 Sobic002G371700 Sobic002G371700 Sobic009G234700--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic009G234700--Sobic003G046300 Sobic005G172500 Sobic005G172500 Sobic009G234700--Sobic005G172500 Sobic001G455800 Sobic001G455800 Sobic009G234700--Sobic001G455800 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic010G188000--Sobic004G315500 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic003G308500 Sobic003G308500 Sobic006G002800--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G002800--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic006G002800--Sobic002G150700 Sobic006G002800--Sobic001G145400 Sobic003G146600 Sobic003G146600 Sobic006G002800--Sobic003G146600 Sobic010G007100 Sobic010G007100 Sobic006G002800--Sobic010G007100 Sobic004G321700 Sobic004G321700 Sobic006G002800--Sobic004G321700 Sobic006G002800--Sobic009G234700 Sobic008G147200 Sobic008G147200 Sobic006G002800--Sobic008G147200 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic009G134900--Sobic004G322300 Sobic004G357400 Sobic004G357400 Sobic009G134900--Sobic004G357400 Sobic009G134900--Sobic001G488100 Sobic009G134900--Sobic004G315500 Sobic009G134900--Sobic004G224600 Sobic010G081700 Sobic010G081700 Sobic009G134900--Sobic010G081700 Sobic001G015400 Sobic001G015400 Sobic009G134900--Sobic001G015400 Sobic009G134900--Sobic010G188000 Sobic003G230600 Sobic003G230600 Sobic009G134900--Sobic003G230600 Sobic004G340400 Sobic004G340400 Sobic008G160000--Sobic004G340400 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic008G160000--Sobic006G002800 Sobic008G160000--Sobic004G224600
Octagon: transcription factors


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