Gene annotation
Transcriptome id Sobic.001G024000.1
Synonym PUM24, Sb01g002280, APUM24
Functional annotation expressed protein
UniProt C5WTZ2
Pfam PF08144
Panther DB PTHR13389
NCBI CDD KOG2050; Puf family RNA-binding protein
KEGG Orthology K14844; pumilio homology domain family member 6
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G16810 : pumilio 24
RAP-DB (Rice) LOC_Os03g61560.1 : expressed protein
MaizeGDB (Corn) Zm00025a033898 , Zm00025a008924 , Zm00025a048525
Brachypodium KQK12336
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
2 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
3 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
4 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
5 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
6 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
7 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
8 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
9 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
10 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
11 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
12 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
13 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
14 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
15 Sobic.005G088900 AGAP007117-PA, putative, expressed -
16 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
17 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
18 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
19 Sobic.004G224600 expressed protein -
20 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2


Gene co-expression network
sample Sobic001G024000 Sobic001G024000 Sobic004G215900 Sobic004G215900 Sobic001G024000--Sobic004G215900 Sobic010G205900 Sobic010G205900 Sobic001G024000--Sobic010G205900 Sobic008G111600 Sobic008G111600 Sobic001G024000--Sobic008G111600 Sobic009G246500 Sobic009G246500 Sobic001G024000--Sobic009G246500 Sobic008G068100 Sobic008G068100 Sobic001G024000--Sobic008G068100 Sobic003G412000 Sobic003G412000 Sobic001G024000--Sobic003G412000 Sobic008G049100 Sobic008G049100 Sobic001G024000--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic001G024000--Sobic003G123200 Sobic002G003300 Sobic002G003300 Sobic001G024000--Sobic002G003300 Sobic004G215900--Sobic008G068100 Sobic006G236000 Sobic006G236000 Sobic004G215900--Sobic006G236000 Sobic009G191500 Sobic009G191500 Sobic004G215900--Sobic009G191500 Sobic004G215900--Sobic002G003300 Sobic004G215900--Sobic001G024000 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic002G071400 Sobic002G071400 Sobic010G205900--Sobic002G071400 Sobic005G098800 Sobic005G098800 Sobic010G205900--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic010G205900--Sobic008G163500 Sobic003G199300 Sobic003G199300 Sobic010G205900--Sobic003G199300 Sobic010G205900--Sobic001G024000 Sobic002G426100 Sobic002G426100 Sobic008G111600--Sobic002G426100 Sobic006G181800 Sobic006G181800 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic008G111600--Sobic004G215900 Sobic008G111600--Sobic002G043000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic005G079201 Sobic005G079201 Sobic008G068100--Sobic005G079201 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic001G483800 Sobic001G483800 Sobic008G068100--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic008G068100--Sobic005G088900 Sobic003G336500 Sobic003G336500 Sobic008G068100--Sobic003G336500 Sobic008G068100--Sobic001G024000 Sobic003G412000--Sobic001G024000 Sobic003G322200 Sobic003G322200 Sobic003G412000--Sobic003G322200 Sobic005G098000 Sobic005G098000 Sobic003G412000--Sobic005G098000 Sobic003G412000--Sobic008G068100 Sobic003G412000--Sobic008G111600 Sobic003G412000--Sobic002G112600 Sobic010G038800 Sobic010G038800 Sobic003G412000--Sobic010G038800 Sobic003G412000--Sobic001G483800 Sobic009G154900 Sobic009G154900 Sobic003G412000--Sobic009G154900 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic010G224700 Sobic010G224700 Sobic003G123200--Sobic010G224700 Sobic002G003300--Sobic004G215900 Sobic002G003300--Sobic009G191500 Sobic002G003300--Sobic008G068100 Sobic002G003300--Sobic008G111600 Sobic002G003300--Sobic005G088900 Sobic002G003300--Sobic006G236000 Sobic002G003300--Sobic002G043000 Sobic002G003300--Sobic001G024000 Sobic002G003300--Sobic006G181800
Octagon: transcription factors


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