Gene annotation
Transcriptome id Sobic.004G215900.1,Sobic.004G215900.2
Synonym Sb04g026110
Functional annotation S1 RNA binding domain containing protein, expressed
UniProt C5XXP5 , A0A1Z5RP41
Pfam PF00575 PF03726 PF03725 PF01138
Panther DB PTHR11252 PTHR11252:SF3
NCBI CDD -
KEGG Orthology K00962; pnp, polyribonucleotide nucleotidyltransferase
Gene Ontology GO:0003676; nucleic acid binding GO:0006396RNA processing GO:0003723RNA binding GO:00001753'-5'-exoribonuclease activity GO:0006402mRNA catabolic process GO:0004654polyribonucleotide nucleotidyltransferase activity


Orthologs (automatic annotation)
TAIR AT5G14580 : polyribonucleotide nucleotidyltransferase, putative
RAP-DB (Rice) LOC_Os02g40460.1 : S1 RNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021161
Brachypodium KQK00360 , KQK00361 , PNT69077
Barley HORVU6Hr1G057570.8 , HORVU6Hr1G057570.9 , HORVU6Hr1G057570.4 , HORVU6Hr1G057570.5 , HORVU6Hr1G057570.6 , HORVU6Hr1G057570.7 , HORVU6Hr1G057570.1 , HORVU6Hr1G057570.3 , HORVU6Hr1G057570.23 , HORVU6Hr1G057570.22 , HORVU6Hr1G057570.21 , HORVU6Hr1G057570.20 , HORVU6Hr1G057570.18 , HORVU6Hr1G057570.19 , HORVU6Hr1G057570.16 , HORVU6Hr1G057570.17 , HORVU6Hr1G057570.14 , HORVU6Hr1G057570.15 , HORVU6Hr1G057570.12 , HORVU6Hr1G057570.13 , HORVU6Hr1G057570.10 , HORVU6Hr1G057570.11
Wheat TraesCS6B02G253600 , TraesCS6A02G228100 , TraesCS6D02G206900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
2 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
3 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
4 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
5 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
6 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
7 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
8 Sobic.002G112600 zinc finger family protein, putative, expressed -
9 Sobic.002G043000 HEN1, putative, expressed -
10 Sobic.005G079201 - -
11 Sobic.005G088900 AGAP007117-PA, putative, expressed -
12 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
13 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
14 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
15 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
16 Sobic.004G027400 - -
17 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
18 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
19 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
20 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1


Gene co-expression network
sample Sobic004G215900 Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic004G215900--Sobic008G068100 Sobic006G236000 Sobic006G236000 Sobic004G215900--Sobic006G236000 Sobic009G191500 Sobic009G191500 Sobic004G215900--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic005G079201 Sobic005G079201 Sobic008G068100--Sobic005G079201 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic001G483800 Sobic001G483800 Sobic008G068100--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic008G068100--Sobic005G088900 Sobic003G336500 Sobic003G336500 Sobic008G068100--Sobic003G336500 Sobic008G068100--Sobic001G024000 Sobic006G236000--Sobic004G215900 Sobic006G236000--Sobic008G068100 Sobic003G123100 Sobic003G123100 Sobic006G236000--Sobic003G123100 Sobic006G236000--Sobic002G043000 Sobic006G112700 Sobic006G112700 Sobic006G236000--Sobic006G112700 Sobic006G181800 Sobic006G181800 Sobic006G236000--Sobic006G181800 Sobic006G236000--Sobic009G191500 Sobic006G236000--Sobic002G003300 Sobic006G236000--Sobic008G111600 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic009G191500--Sobic001G483800 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic002G003300--Sobic004G215900 Sobic002G003300--Sobic009G191500 Sobic002G003300--Sobic008G068100 Sobic002G003300--Sobic008G111600 Sobic002G003300--Sobic005G088900 Sobic002G003300--Sobic006G236000 Sobic002G003300--Sobic002G043000 Sobic002G003300--Sobic001G024000 Sobic002G003300--Sobic006G181800 Sobic001G024000--Sobic004G215900 Sobic010G205900 Sobic010G205900 Sobic001G024000--Sobic010G205900 Sobic001G024000--Sobic008G111600 Sobic009G246500 Sobic009G246500 Sobic001G024000--Sobic009G246500 Sobic001G024000--Sobic008G068100 Sobic003G412000 Sobic003G412000 Sobic001G024000--Sobic003G412000 Sobic008G049100 Sobic008G049100 Sobic001G024000--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic001G024000--Sobic003G123200 Sobic001G024000--Sobic002G003300 Sobic002G426100 Sobic002G426100 Sobic008G111600--Sobic002G426100 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic008G111600--Sobic004G215900 Sobic008G111600--Sobic002G043000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic004G151000 Sobic004G151000 Sobic002G112600--Sobic004G151000 Sobic002G112600--Sobic004G215900 Sobic010G224700 Sobic010G224700 Sobic002G112600--Sobic010G224700 Sobic007G014800 Sobic007G014800 Sobic002G112600--Sobic007G014800 Sobic005G000300 Sobic005G000300 Sobic002G112600--Sobic005G000300 Sobic004G027400 Sobic004G027400 Sobic002G112600--Sobic004G027400 Sobic009G163600 Sobic009G163600 Sobic002G112600--Sobic009G163600 Sobic001G453500 Sobic001G453500 Sobic002G112600--Sobic001G453500 Sobic004G027300 Sobic004G027300 Sobic002G112600--Sobic004G027300 Sobic002G043000--Sobic008G111600 Sobic002G043000--Sobic004G215900 Sobic002G043000--Sobic002G426100 Sobic002G043000--Sobic006G236000 Sobic002G043000--Sobic008G068100 Sobic002G043000--Sobic006G181800 Sobic002G043000--Sobic004G038100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500
Octagon: transcription factors


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