Gene annotation
Transcriptome id Sobic.010G153300.2,Sobic.010G153300.3
Synonym Sb10g020525
Functional annotation protein phosphatase 2C, putative, expressed
UniProt A0A1W0VT85 , A0A1W0VTA8
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF265
NCBI CDD -
KEGG Orthology K17679; ATP-dependent RNA helicase MSS116, mitochondrial
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G63630 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os06g33520.1 : DEAD/DEAH box helicase, putative, expressed
MaizeGDB (Corn) Zm00025a050890
Brachypodium KQK18080 , KQK18081
Barley -
Wheat TraesCS7B02G232200 , TraesCS7D02G328100 , TraesCS7A02G350700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
2 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
3 Sobic.010G097500 DNA polymerase lambda, putative, expressed K03512: DNA polymerase lambda
4 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
5 Sobic.002G043000 HEN1, putative, expressed -
6 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
7 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
8 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
9 Sobic.006G206200 - -
10 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
11 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
12 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
13 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
14 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
15 Sobic.003G072500 transcription factor X1, putative, expressed -
16 Sobic.003G144000 pentatricopeptide, putative, expressed -
17 Sobic.006G273900 expressed protein -
18 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
19 Sobic.006G280100 SET domain containing protein, expressed -
20 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12


Gene co-expression network
sample Sobic010G153300 Sobic010G153300 Sobic009G191500 Sobic009G191500 Sobic010G153300--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic010G153300--Sobic004G215900 Sobic010G097500 Sobic010G097500 Sobic010G153300--Sobic010G097500 Sobic010G038800 Sobic010G038800 Sobic010G153300--Sobic010G038800 Sobic002G043000 Sobic002G043000 Sobic010G153300--Sobic002G043000 Sobic007G059700 Sobic007G059700 Sobic010G153300--Sobic007G059700 Sobic008G068100 Sobic008G068100 Sobic010G153300--Sobic008G068100 Sobic005G098000 Sobic005G098000 Sobic010G153300--Sobic005G098000 Sobic006G206200 Sobic006G206200 Sobic010G153300--Sobic006G206200 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic005G088900 Sobic005G088900 Sobic009G191500--Sobic005G088900 Sobic002G003300 Sobic002G003300 Sobic009G191500--Sobic002G003300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic003G336500 Sobic003G336500 Sobic009G191500--Sobic003G336500 Sobic004G215900--Sobic008G068100 Sobic006G236000 Sobic006G236000 Sobic004G215900--Sobic006G236000 Sobic004G215900--Sobic009G191500 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic004G215900--Sobic002G043000 Sobic010G097500--Sobic010G153300 Sobic010G097500--Sobic007G059700 Sobic010G097500--Sobic002G043000 Sobic009G177200 Sobic009G177200 Sobic010G097500--Sobic009G177200 Sobic006G008300 Sobic006G008300 Sobic010G097500--Sobic006G008300 Sobic010G097500--Sobic004G215900 Sobic003G104100 Sobic003G104100 Sobic010G097500--Sobic003G104100 Sobic006G273900 Sobic006G273900 Sobic010G097500--Sobic006G273900 Sobic001G199500 Sobic001G199500 Sobic010G097500--Sobic001G199500 Sobic010G038800--Sobic004G215900 Sobic003G144000 Sobic003G144000 Sobic010G038800--Sobic003G144000 Sobic010G038800--Sobic009G191500 Sobic010G038800--Sobic010G153300 Sobic001G408300 Sobic001G408300 Sobic010G038800--Sobic001G408300 Sobic001G372800 Sobic001G372800 Sobic010G038800--Sobic001G372800 Sobic003G322200 Sobic003G322200 Sobic010G038800--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic010G038800--Sobic003G123200 Sobic010G038800--Sobic008G068100 Sobic002G043000--Sobic008G111600 Sobic002G043000--Sobic004G215900 Sobic002G426100 Sobic002G426100 Sobic002G043000--Sobic002G426100 Sobic002G043000--Sobic006G236000 Sobic002G043000--Sobic008G068100 Sobic006G181800 Sobic006G181800 Sobic002G043000--Sobic006G181800 Sobic002G043000--Sobic004G038100 Sobic006G280100 Sobic006G280100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500 Sobic007G059700--Sobic006G273900 Sobic007G059700--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic007G059700--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic007G059700--Sobic001G049800 Sobic004G027300 Sobic004G027300 Sobic007G059700--Sobic004G027300 Sobic007G059700--Sobic009G191500 Sobic001G453500 Sobic001G453500 Sobic007G059700--Sobic001G453500 Sobic007G059700--Sobic010G097500 Sobic006G111200 Sobic006G111200 Sobic007G059700--Sobic006G111200 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic008G068100--Sobic005G079201 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic008G068100--Sobic001G024000 Sobic010G161525 Sobic010G161525 Sobic005G098000--Sobic010G161525 Sobic005G098000--Sobic008G111600 Sobic005G098000--Sobic003G144000 Sobic005G098000--Sobic006G206200 Sobic003G412000 Sobic003G412000 Sobic005G098000--Sobic003G412000 Sobic003G432300 Sobic003G432300 Sobic005G098000--Sobic003G432300 Sobic003G130000 Sobic003G130000 Sobic005G098000--Sobic003G130000 Sobic005G098000--Sobic005G088900 Sobic005G098000--Sobic010G038800 Sobic006G206200--Sobic002G043000 Sobic006G206200--Sobic005G098000 Sobic006G206200--Sobic004G215900 Sobic006G206200--Sobic004G038100 Sobic006G206200--Sobic008G111600 Sobic003G425100 Sobic003G425100 Sobic006G206200--Sobic003G425100 Sobic006G206200--Sobic004G027300 Sobic006G206200--Sobic010G153300 Sobic006G206200--Sobic009G191500
Octagon: transcription factors


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