Gene annotation
Transcriptome id Sobic.003G432300.1
Synonym Sb03g046370
Functional annotation Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32 (PubMedID : 28624908)
expressed protein
UniProt C5XIJ5
Pfam PF08161
Panther DB PTHR21576 PTHR21576:SF19
NCBI CDD -
KEGG Orthology K14794; ribosomal RNA-processing protein 12
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G23540 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os01g72780.1 : expressed protein
MaizeGDB (Corn) Zm00025a025921
Brachypodium KQK11629
Barley HORVU3Hr1G110140.28 , HORVU3Hr1G110140.21 , HORVU3Hr1G110140.20 , HORVU3Hr1G110140.23 , HORVU3Hr1G110140.22 , HORVU3Hr1G110140.24 , HORVU3Hr1G110140.27 , HORVU3Hr1G110140.26 , HORVU3Hr1G110140.8 , HORVU3Hr1G110140.9 , HORVU3Hr1G110140.6 , HORVU3Hr1G110140.7 , HORVU3Hr1G110140.4 , HORVU3Hr1G110140.5 , HORVU3Hr1G110140.2 , HORVU3Hr1G110140.3 , HORVU3Hr1G110140.1 , HORVU3Hr1G110140.30 , HORVU3Hr1G110140.16 , HORVU3Hr1G110140.14 , HORVU3Hr1G110140.15 , HORVU3Hr1G110140.17 , HORVU3Hr1G110140.10 , HORVU3Hr1G110140.11 , HORVU3Hr1G110140.12 , HORVU3Hr1G110140.13 , HORVU3Hr1G110140.18 , HORVU3Hr1G110140.19
Wheat TraesCS3A02G498100 , TraesCSU02G058000 , TraesCS3B02G561100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
3 Sobic.005G088900 AGAP007117-PA, putative, expressed -
4 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
5 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
6 Sobic.003G144000 pentatricopeptide, putative, expressed -
7 Sobic.008G000600 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
8 Sobic.002G043000 HEN1, putative, expressed -
9 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
10 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
11 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
12 Sobic.002G155100 bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed K12524: bifunctional aspartokinase / homoserine dehydrogenase 1
13 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
14 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
15 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
16 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
17 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
18 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
19 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
20 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1


Gene co-expression network
sample Sobic003G432300 Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic003G432300--Sobic002G126800 Sobic005G028100 Sobic005G028100 Sobic003G432300--Sobic005G028100 Sobic005G088900 Sobic005G088900 Sobic003G432300--Sobic005G088900 Sobic002G132600 Sobic002G132600 Sobic003G432300--Sobic002G132600 Sobic001G373000 Sobic001G373000 Sobic003G432300--Sobic001G373000 Sobic003G144000 Sobic003G144000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic002G043000 Sobic002G043000 Sobic003G432300--Sobic002G043000 Sobic004G038100 Sobic004G038100 Sobic003G432300--Sobic004G038100 Sobic002G126800--Sobic003G432300 Sobic002G126800--Sobic005G028100 Sobic002G126800--Sobic001G373000 Sobic009G104900 Sobic009G104900 Sobic002G126800--Sobic009G104900 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic006G033101 Sobic006G033101 Sobic002G126800--Sobic006G033101 Sobic007G069700 Sobic007G069700 Sobic002G126800--Sobic007G069700 Sobic002G126800--Sobic005G088900 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic010G205900 Sobic010G205900 Sobic005G028100--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic005G028100--Sobic002G126800 Sobic005G028100--Sobic001G373000 Sobic005G028100--Sobic002G132600 Sobic001G199500 Sobic001G199500 Sobic005G088900--Sobic001G199500 Sobic009G191500 Sobic009G191500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic005G088900--Sobic008G068100 Sobic005G088900--Sobic003G432300 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic002G132600--Sobic009G104900 Sobic002G132600--Sobic003G432300 Sobic002G132600--Sobic005G028100 Sobic002G132600--Sobic001G373000 Sobic002G132600--Sobic002G126800 Sobic002G132600--Sobic004G038100 Sobic006G059500 Sobic006G059500 Sobic002G132600--Sobic006G059500 Sobic002G254800 Sobic002G254800 Sobic002G132600--Sobic002G254800 Sobic010G250800 Sobic010G250800 Sobic002G132600--Sobic010G250800 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic001G373000--Sobic005G028100 Sobic003G144000--Sobic005G088900 Sobic003G144000--Sobic001G199500 Sobic010G038800 Sobic010G038800 Sobic003G144000--Sobic010G038800 Sobic008G111600 Sobic008G111600 Sobic003G144000--Sobic008G111600 Sobic003G144000--Sobic003G432300 Sobic005G098000 Sobic005G098000 Sobic003G144000--Sobic005G098000 Sobic004G082700 Sobic004G082700 Sobic003G144000--Sobic004G082700 Sobic006G181800 Sobic006G181800 Sobic003G144000--Sobic006G181800 Sobic001G200200 Sobic001G200200 Sobic003G144000--Sobic001G200200 Sobic008G000600--Sobic003G432300 Sobic001G334100 Sobic001G334100 Sobic008G000600--Sobic001G334100 Sobic002G182000 Sobic002G182000 Sobic008G000600--Sobic002G182000 Sobic008G000600--Sobic003G259600 Sobic006G069100 Sobic006G069100 Sobic008G000600--Sobic006G069100 Sobic010G099800 Sobic010G099800 Sobic008G000600--Sobic010G099800 Sobic008G000600--Sobic002G126800 Sobic003G235700 Sobic003G235700 Sobic008G000600--Sobic003G235700 Sobic002G399900 Sobic002G399900 Sobic008G000600--Sobic002G399900 Sobic002G043000--Sobic008G111600 Sobic002G043000--Sobic004G215900 Sobic002G426100 Sobic002G426100 Sobic002G043000--Sobic002G426100 Sobic006G236000 Sobic006G236000 Sobic002G043000--Sobic006G236000 Sobic002G043000--Sobic008G068100 Sobic002G043000--Sobic006G181800 Sobic002G043000--Sobic004G038100 Sobic006G280100 Sobic006G280100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900
Octagon: transcription factors


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