Gene annotation
Transcriptome id Sobic.002G126800.4,Sobic.002G126800.1
Synonym
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1B6QAV5
Pfam PF13414
Panther DB PTHR16193
NCBI CDD KOG1128; Uncharacterized conserved protein, contains TPR repeats
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G17270 : Protein prenylyltransferase superfamily protein
RAP-DB (Rice) LOC_Os07g27180.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013547
Brachypodium KQK16419
Barley -
Wheat TraesCS4B02G179800 , TraesCS7B02G218500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
2 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
3 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
4 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
5 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
6 Sobic.002G155100 bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed K12524: bifunctional aspartokinase / homoserine dehydrogenase 1
7 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
8 Sobic.007G069700 gar2, putative, expressed K11294: NCL, nucleolin
9 Sobic.005G088900 AGAP007117-PA, putative, expressed -
10 Sobic.002G043000 HEN1, putative, expressed -
11 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
12 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
13 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
14 Sobic.002G264300 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
15 Sobic.007G167800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroxy-acid dehydratase, putative, expressed K01687: dihydroxy-acid dehydratase
16 Sobic.008G000600 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
17 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
18 Sobic.006G206200 - -
19 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
20 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E


Gene co-expression network
sample Sobic002G126800 Sobic002G126800 Sobic003G432300 Sobic003G432300 Sobic002G126800--Sobic003G432300 Sobic005G028100 Sobic005G028100 Sobic002G126800--Sobic005G028100 Sobic001G373000 Sobic001G373000 Sobic002G126800--Sobic001G373000 Sobic009G104900 Sobic009G104900 Sobic002G126800--Sobic009G104900 Sobic002G132600 Sobic002G132600 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic006G033101 Sobic006G033101 Sobic002G126800--Sobic006G033101 Sobic007G069700 Sobic007G069700 Sobic002G126800--Sobic007G069700 Sobic005G088900 Sobic005G088900 Sobic002G126800--Sobic005G088900 Sobic003G432300--Sobic002G126800 Sobic003G432300--Sobic005G028100 Sobic003G432300--Sobic005G088900 Sobic003G432300--Sobic002G132600 Sobic003G432300--Sobic001G373000 Sobic003G144000 Sobic003G144000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic002G043000 Sobic002G043000 Sobic003G432300--Sobic002G043000 Sobic004G038100 Sobic004G038100 Sobic003G432300--Sobic004G038100 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic010G205900 Sobic010G205900 Sobic005G028100--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic005G028100--Sobic002G126800 Sobic005G028100--Sobic001G373000 Sobic005G028100--Sobic002G132600 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic001G373000--Sobic005G028100 Sobic009G104900--Sobic006G033101 Sobic009G104900--Sobic001G373000 Sobic009G104900--Sobic002G132600 Sobic009G104900--Sobic002G126800 Sobic009G104900--Sobic004G038100 Sobic005G199200 Sobic005G199200 Sobic009G104900--Sobic005G199200 Sobic004G085000 Sobic004G085000 Sobic009G104900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic009G104900--Sobic001G373800 Sobic002G430300 Sobic002G430300 Sobic009G104900--Sobic002G430300 Sobic002G132600--Sobic009G104900 Sobic002G132600--Sobic003G432300 Sobic002G132600--Sobic005G028100 Sobic002G132600--Sobic001G373000 Sobic002G132600--Sobic002G126800 Sobic002G132600--Sobic004G038100 Sobic006G059500 Sobic006G059500 Sobic002G132600--Sobic006G059500 Sobic002G254800 Sobic002G254800 Sobic002G132600--Sobic002G254800 Sobic010G250800 Sobic010G250800 Sobic002G132600--Sobic010G250800 Sobic006G193500 Sobic006G193500 Sobic002G155100--Sobic006G193500 Sobic002G155100--Sobic002G126800 Sobic002G155100--Sobic003G432300 Sobic006G237000 Sobic006G237000 Sobic002G155100--Sobic006G237000 Sobic003G102700 Sobic003G102700 Sobic002G155100--Sobic003G102700 Sobic002G155100--Sobic005G028100 Sobic002G155100--Sobic001G373000 Sobic001G199500 Sobic001G199500 Sobic002G155100--Sobic001G199500 Sobic002G155100--Sobic001G013300 Sobic006G033101--Sobic004G038100 Sobic006G033101--Sobic009G104900 Sobic006G033101--Sobic001G373800 Sobic006G181800 Sobic006G181800 Sobic006G033101--Sobic006G181800 Sobic002G371600 Sobic002G371600 Sobic006G033101--Sobic002G371600 Sobic006G033101--Sobic001G373000 Sobic006G033101--Sobic002G126800 Sobic006G033101--Sobic002G430300 Sobic006G280100 Sobic006G280100 Sobic006G033101--Sobic006G280100 Sobic007G069700--Sobic002G126800 Sobic007G069700--Sobic003G432300 Sobic007G069700--Sobic005G028100 Sobic007G069700--Sobic002G132600 Sobic010G038800 Sobic010G038800 Sobic007G069700--Sobic010G038800 Sobic007G069700--Sobic001G373000 Sobic009G253400 Sobic009G253400 Sobic007G069700--Sobic009G253400 Sobic007G069700--Sobic004G038100 Sobic001G097400 Sobic001G097400 Sobic007G069700--Sobic001G097400 Sobic005G088900--Sobic001G199500 Sobic009G191500 Sobic009G191500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic005G088900--Sobic008G068100 Sobic005G088900--Sobic003G432300 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300
Octagon: transcription factors


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