Gene annotation
Transcriptome id Sobic.007G069700.1
Synonym Sb07g005510, ATNUC-L1, PARL1, NUC-L1
Functional annotation gar2, putative, expressed
UniProt C5YID2
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF243
NCBI CDD KOG4210; Nuclear localization sequence binding protein
KEGG Orthology K11294; NCL, nucleolin
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G18610 : nucleolin like 2
RAP-DB (Rice) LOC_Os04g52960.1 : nucleolin, putative, expressed
MaizeGDB (Corn) Zm00025a029950 , Zm00025a036574 , Zm00025a029919
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G069700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
3 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
4 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
5 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
6 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
7 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
8 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
9 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
10 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
11 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
12 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
13 Sobic.003G144000 pentatricopeptide, putative, expressed -
14 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
15 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
16 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
17 Sobic.005G088900 AGAP007117-PA, putative, expressed -
18 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
19 Sobic.006G206200 - -
20 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase


Gene co-expression network
sample Sobic007G069700 Sobic007G069700 Sobic002G126800 Sobic002G126800 Sobic007G069700--Sobic002G126800 Sobic003G432300 Sobic003G432300 Sobic007G069700--Sobic003G432300 Sobic005G028100 Sobic005G028100 Sobic007G069700--Sobic005G028100 Sobic002G132600 Sobic002G132600 Sobic007G069700--Sobic002G132600 Sobic010G038800 Sobic010G038800 Sobic007G069700--Sobic010G038800 Sobic001G373000 Sobic001G373000 Sobic007G069700--Sobic001G373000 Sobic009G253400 Sobic009G253400 Sobic007G069700--Sobic009G253400 Sobic004G038100 Sobic004G038100 Sobic007G069700--Sobic004G038100 Sobic001G097400 Sobic001G097400 Sobic007G069700--Sobic001G097400 Sobic002G126800--Sobic003G432300 Sobic002G126800--Sobic005G028100 Sobic002G126800--Sobic001G373000 Sobic009G104900 Sobic009G104900 Sobic002G126800--Sobic009G104900 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic006G033101 Sobic006G033101 Sobic002G126800--Sobic006G033101 Sobic002G126800--Sobic007G069700 Sobic005G088900 Sobic005G088900 Sobic002G126800--Sobic005G088900 Sobic003G432300--Sobic002G126800 Sobic003G432300--Sobic005G028100 Sobic003G432300--Sobic005G088900 Sobic003G432300--Sobic002G132600 Sobic003G432300--Sobic001G373000 Sobic003G144000 Sobic003G144000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic002G043000 Sobic002G043000 Sobic003G432300--Sobic002G043000 Sobic003G432300--Sobic004G038100 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic010G205900 Sobic010G205900 Sobic005G028100--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic005G028100--Sobic002G126800 Sobic005G028100--Sobic001G373000 Sobic005G028100--Sobic002G132600 Sobic002G132600--Sobic009G104900 Sobic002G132600--Sobic003G432300 Sobic002G132600--Sobic005G028100 Sobic002G132600--Sobic001G373000 Sobic002G132600--Sobic002G126800 Sobic002G132600--Sobic004G038100 Sobic006G059500 Sobic006G059500 Sobic002G132600--Sobic006G059500 Sobic002G254800 Sobic002G254800 Sobic002G132600--Sobic002G254800 Sobic010G250800 Sobic010G250800 Sobic002G132600--Sobic010G250800 Sobic004G215900 Sobic004G215900 Sobic010G038800--Sobic004G215900 Sobic010G038800--Sobic003G144000 Sobic009G191500 Sobic009G191500 Sobic010G038800--Sobic009G191500 Sobic010G153300 Sobic010G153300 Sobic010G038800--Sobic010G153300 Sobic001G408300 Sobic001G408300 Sobic010G038800--Sobic001G408300 Sobic001G372800 Sobic001G372800 Sobic010G038800--Sobic001G372800 Sobic003G322200 Sobic003G322200 Sobic010G038800--Sobic003G322200 Sobic010G038800--Sobic003G123200 Sobic008G068100 Sobic008G068100 Sobic010G038800--Sobic008G068100 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic001G373000--Sobic005G028100 Sobic002G218700 Sobic002G218700 Sobic009G253400--Sobic002G218700 Sobic010G170900 Sobic010G170900 Sobic009G253400--Sobic010G170900 Sobic001G261585 Sobic001G261585 Sobic009G253400--Sobic001G261585 Sobic008G007000 Sobic008G007000 Sobic009G253400--Sobic008G007000 Sobic002G183300 Sobic002G183300 Sobic009G253400--Sobic002G183300 Sobic009G055400 Sobic009G055400 Sobic009G253400--Sobic009G055400 Sobic003G347300 Sobic003G347300 Sobic009G253400--Sobic003G347300 Sobic001G372900 Sobic001G372900 Sobic009G253400--Sobic001G372900 Sobic009G253400--Sobic002G132600 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900 Sobic001G235700 Sobic001G235700 Sobic001G097400--Sobic001G235700 Sobic001G436300 Sobic001G436300 Sobic001G097400--Sobic001G436300 Sobic001G097400--Sobic005G088900 Sobic006G127500 Sobic006G127500 Sobic001G097400--Sobic006G127500 Sobic002G110500 Sobic002G110500 Sobic001G097400--Sobic002G110500 Sobic003G098200 Sobic003G098200 Sobic001G097400--Sobic003G098200 Sobic001G097400--Sobic003G432300 Sobic001G149100 Sobic001G149100 Sobic001G097400--Sobic001G149100 Sobic006G251600 Sobic006G251600 Sobic001G097400--Sobic006G251600
Octagon: transcription factors


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