Gene annotation
Transcriptome id Sobic.010G038800.2
Synonym NFA2, Sb10g003450, NFA02, NAP1, 2
Functional annotation NAP domain containing protein, putative, expressed
UniProt A0A109ND25 , A0A1W0VRB9 , A1E9W2
Pfam PF00956
Panther DB PTHR11875 PTHR11875:SF73
NCBI CDD KOG1507; Nucleosome assembly protein NAP-1
KEGG Orthology K11279; NAP1L1, nucleosome assembly protein 1-like 1
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G19480 : nucleosome assembly protein 1;2
RAP-DB (Rice) LOC_Os06g05660.1 : NAP domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a050029 , Zm00025a041516
Brachypodium KQK19855 , KQK19856
Barley HORVU2Hr1G066940.1 , HORVU2Hr1G066940.3 , HORVU2Hr1G066940.2
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G038800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
2 Sobic.003G144000 pentatricopeptide, putative, expressed -
3 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
4 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
5 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
7 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
8 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
9 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
10 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
11 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
12 Sobic.002G268100 - K16911: ATP-dependent RNA helicase DDX21
13 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
14 Sobic.005G088900 AGAP007117-PA, putative, expressed -
15 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
16 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
17 Sobic.005G079201 - -
18 Sobic.006G109400 pentatricopeptide, putative, expressed -
19 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
20 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking


Gene co-expression network
sample Sobic010G038800 Sobic010G038800 Sobic004G215900 Sobic004G215900 Sobic010G038800--Sobic004G215900 Sobic003G144000 Sobic003G144000 Sobic010G038800--Sobic003G144000 Sobic009G191500 Sobic009G191500 Sobic010G038800--Sobic009G191500 Sobic010G153300 Sobic010G153300 Sobic010G038800--Sobic010G153300 Sobic001G408300 Sobic001G408300 Sobic010G038800--Sobic001G408300 Sobic001G372800 Sobic001G372800 Sobic010G038800--Sobic001G372800 Sobic003G322200 Sobic003G322200 Sobic010G038800--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic010G038800--Sobic003G123200 Sobic008G068100 Sobic008G068100 Sobic010G038800--Sobic008G068100 Sobic004G215900--Sobic008G068100 Sobic006G236000 Sobic006G236000 Sobic004G215900--Sobic006G236000 Sobic004G215900--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000 Sobic005G088900 Sobic005G088900 Sobic003G144000--Sobic005G088900 Sobic001G199500 Sobic001G199500 Sobic003G144000--Sobic001G199500 Sobic003G144000--Sobic010G038800 Sobic003G144000--Sobic008G111600 Sobic003G432300 Sobic003G432300 Sobic003G144000--Sobic003G432300 Sobic005G098000 Sobic005G098000 Sobic003G144000--Sobic005G098000 Sobic004G082700 Sobic004G082700 Sobic003G144000--Sobic004G082700 Sobic006G181800 Sobic006G181800 Sobic003G144000--Sobic006G181800 Sobic001G200200 Sobic001G200200 Sobic003G144000--Sobic001G200200 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic003G336500 Sobic003G336500 Sobic009G191500--Sobic003G336500 Sobic010G153300--Sobic009G191500 Sobic010G153300--Sobic004G215900 Sobic010G097500 Sobic010G097500 Sobic010G153300--Sobic010G097500 Sobic010G153300--Sobic010G038800 Sobic010G153300--Sobic002G043000 Sobic007G059700 Sobic007G059700 Sobic010G153300--Sobic007G059700 Sobic010G153300--Sobic008G068100 Sobic010G153300--Sobic005G098000 Sobic006G206200 Sobic006G206200 Sobic010G153300--Sobic006G206200 Sobic007G006800 Sobic007G006800 Sobic001G408300--Sobic007G006800 Sobic010G250800 Sobic010G250800 Sobic001G408300--Sobic010G250800 Sobic010G065800 Sobic010G065800 Sobic001G408300--Sobic010G065800 Sobic001G408300--Sobic010G038800 Sobic001G061800 Sobic001G061800 Sobic001G408300--Sobic001G061800 Sobic006G208400 Sobic006G208400 Sobic001G408300--Sobic006G208400 Sobic001G408300--Sobic005G088900 Sobic009G010300 Sobic009G010300 Sobic001G408300--Sobic009G010300 Sobic010G252700 Sobic010G252700 Sobic001G408300--Sobic010G252700 Sobic001G372800--Sobic001G483800 Sobic002G268100 Sobic002G268100 Sobic001G372800--Sobic002G268100 Sobic001G372800--Sobic003G322200 Sobic001G372800--Sobic009G010300 Sobic001G372800--Sobic009G191500 Sobic001G401400 Sobic001G401400 Sobic001G372800--Sobic001G401400 Sobic001G372800--Sobic010G038800 Sobic005G028100 Sobic005G028100 Sobic001G372800--Sobic005G028100 Sobic001G372800--Sobic003G432300 Sobic003G322200--Sobic001G372800 Sobic003G322200--Sobic001G401400 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic003G322200--Sobic001G483800 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic008G049100 Sobic008G049100 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic010G224700 Sobic010G224700 Sobic003G123200--Sobic010G224700 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic008G068100--Sobic005G079201 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic008G068100--Sobic001G024000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.