Gene annotation
Transcriptome id Sobic.006G109400.1
Synonym Sb06g019190
Functional annotation pentatricopeptide, putative, expressed
UniProt C5Y9X3
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF474
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39952 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os04g38980.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a056233
Brachypodium KQJ83014
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G030000 pentatricopeptide, putative, expressed -
2 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
3 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
4 Sobic.006G069100 pentatricopeptide, putative, expressed -
5 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
7 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
8 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
10 Sobic.001G149100 vegetative storage protein, putative, expressed -
11 Sobic.006G085900 pentatricopeptide, putative, expressed -
12 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
13 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
15 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
16 Sobic.009G238700 EMB2744, putative, expressed -
17 Sobic.008G031200 pentatricopeptide, putative, expressed -
18 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
19 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
20 Sobic.001G049800 DDT domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G109400 Sobic006G109400 Sobic007G030000 Sobic007G030000 Sobic006G109400--Sobic007G030000 Sobic001G347100 Sobic001G347100 Sobic006G109400--Sobic001G347100 Sobic008G099900 Sobic008G099900 Sobic006G109400--Sobic008G099900 Sobic006G069100 Sobic006G069100 Sobic006G109400--Sobic006G069100 Sobic001G408300 Sobic001G408300 Sobic006G109400--Sobic001G408300 Sobic010G038800 Sobic010G038800 Sobic006G109400--Sobic010G038800 Sobic010G277200 Sobic010G277200 Sobic006G109400--Sobic010G277200 Sobic009G155400 Sobic009G155400 Sobic006G109400--Sobic009G155400 Sobic005G210700 Sobic005G210700 Sobic006G109400--Sobic005G210700 Sobic007G030000--Sobic006G109400 Sobic006G111200 Sobic006G111200 Sobic007G030000--Sobic006G111200 Sobic002G084400 Sobic002G084400 Sobic007G030000--Sobic002G084400 Sobic002G172500 Sobic002G172500 Sobic007G030000--Sobic002G172500 Sobic008G171500 Sobic008G171500 Sobic007G030000--Sobic008G171500 Sobic001G049800 Sobic001G049800 Sobic007G030000--Sobic001G049800 Sobic003G322200 Sobic003G322200 Sobic007G030000--Sobic003G322200 Sobic002G378100 Sobic002G378100 Sobic007G030000--Sobic002G378100 Sobic010G153300 Sobic010G153300 Sobic007G030000--Sobic010G153300 Sobic001G149100 Sobic001G149100 Sobic001G347100--Sobic001G149100 Sobic001G391101 Sobic001G391101 Sobic001G347100--Sobic001G391101 Sobic001G081300 Sobic001G081300 Sobic001G347100--Sobic001G081300 Sobic009G238700 Sobic009G238700 Sobic001G347100--Sobic009G238700 Sobic007G179600 Sobic007G179600 Sobic001G347100--Sobic007G179600 Sobic003G299200 Sobic003G299200 Sobic001G347100--Sobic003G299200 Sobic004G241000 Sobic004G241000 Sobic001G347100--Sobic004G241000 Sobic001G347100--Sobic006G069100 Sobic001G347100--Sobic009G155400 Sobic008G099900--Sobic005G210700 Sobic006G085900 Sobic006G085900 Sobic008G099900--Sobic006G085900 Sobic008G099900--Sobic009G155400 Sobic002G251800 Sobic002G251800 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic008G099900--Sobic006G109400 Sobic009G116400 Sobic009G116400 Sobic008G099900--Sobic009G116400 Sobic008G099900--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic008G099900--Sobic006G271900 Sobic006G069100--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic006G069100--Sobic004G256900 Sobic010G068900 Sobic010G068900 Sobic006G069100--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic007G006800 Sobic007G006800 Sobic001G408300--Sobic007G006800 Sobic010G250800 Sobic010G250800 Sobic001G408300--Sobic010G250800 Sobic010G065800 Sobic010G065800 Sobic001G408300--Sobic010G065800 Sobic001G408300--Sobic010G038800 Sobic001G061800 Sobic001G061800 Sobic001G408300--Sobic001G061800 Sobic006G208400 Sobic006G208400 Sobic001G408300--Sobic006G208400 Sobic005G088900 Sobic005G088900 Sobic001G408300--Sobic005G088900 Sobic009G010300 Sobic009G010300 Sobic001G408300--Sobic009G010300 Sobic010G252700 Sobic010G252700 Sobic001G408300--Sobic010G252700 Sobic004G215900 Sobic004G215900 Sobic010G038800--Sobic004G215900 Sobic003G144000 Sobic003G144000 Sobic010G038800--Sobic003G144000 Sobic009G191500 Sobic009G191500 Sobic010G038800--Sobic009G191500 Sobic010G038800--Sobic010G153300 Sobic010G038800--Sobic001G408300 Sobic001G372800 Sobic001G372800 Sobic010G038800--Sobic001G372800 Sobic010G038800--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic010G038800--Sobic003G123200 Sobic008G068100 Sobic008G068100 Sobic010G038800--Sobic008G068100 Sobic007G038700 Sobic007G038700 Sobic010G277200--Sobic007G038700 Sobic003G153900 Sobic003G153900 Sobic010G277200--Sobic003G153900 Sobic009G148200 Sobic009G148200 Sobic010G277200--Sobic009G148200 Sobic004G199200 Sobic004G199200 Sobic010G277200--Sobic004G199200 Sobic010G277200--Sobic001G408300 Sobic008G169400 Sobic008G169400 Sobic010G277200--Sobic008G169400 Sobic007G031300 Sobic007G031300 Sobic010G277200--Sobic007G031300 Sobic010G277200--Sobic006G109400 Sobic003G351900 Sobic003G351900 Sobic010G277200--Sobic003G351900 Sobic009G155400--Sobic009G116400 Sobic009G155400--Sobic008G163400 Sobic009G155400--Sobic004G241000 Sobic009G155400--Sobic006G085900 Sobic009G155400--Sobic004G217900 Sobic009G155400--Sobic006G069100 Sobic009G155400--Sobic002G172500 Sobic006G262700 Sobic006G262700 Sobic009G155400--Sobic006G262700 Sobic009G155400--Sobic005G210700 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic005G210700--Sobic009G116400 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic005G210700--Sobic001G347100 Sobic008G066900 Sobic008G066900 Sobic005G210700--Sobic008G066900 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000
Octagon: transcription factors


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