Gene annotation
Transcriptome id Sobic.002G084400.1
Synonym Sb02g007035
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1B6Q9Y7
Pfam PF14432 PF13812 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF727
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G22070 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os07g13540.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045460
Brachypodium KQK20291
Barley HORVU2Hr1G023100.4 , HORVU2Hr1G023100.2 , HORVU2Hr1G023100.3 , HORVU2Hr1G023100.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.008G041000 expressed protein -
3 Sobic.006G085900 pentatricopeptide, putative, expressed -
4 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
5 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.006G069100 pentatricopeptide, putative, expressed -
7 Sobic.008G031200 pentatricopeptide, putative, expressed -
8 Sobic.008G171500 PPR repeat containing protein, expressed -
9 Sobic.003G067201 - -
10 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
11 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
13 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
14 Sobic.010G091500 pentatricopeptide, putative, expressed -
15 Sobic.004G030600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.006G089900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.006G109400 pentatricopeptide, putative, expressed -
18 Sobic.001G049800 DDT domain containing protein, putative, expressed -
19 Sobic.007G179600 pentatricopeptide, putative, expressed -
20 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1


Gene co-expression network
sample Sobic002G084400 Sobic002G084400 Sobic010G232700 Sobic010G232700 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic006G069100 Sobic006G069100 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic010G232700--Sobic008G171500 Sobic003G203100 Sobic003G203100 Sobic010G232700--Sobic003G203100 Sobic004G241000 Sobic004G241000 Sobic010G232700--Sobic004G241000 Sobic010G232700--Sobic006G069100 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic008G041000--Sobic002G084400 Sobic008G041000--Sobic010G232700 Sobic008G041000--Sobic006G085900 Sobic008G041000--Sobic003G203100 Sobic008G041000--Sobic005G028300 Sobic008G041000--Sobic002G251800 Sobic002G389200 Sobic002G389200 Sobic008G041000--Sobic002G389200 Sobic009G134400 Sobic009G134400 Sobic008G041000--Sobic009G134400 Sobic008G041000--Sobic006G069100 Sobic006G085900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic006G085900--Sobic010G068900 Sobic009G155400 Sobic009G155400 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic006G085900--Sobic002G172500 Sobic008G099900 Sobic008G099900 Sobic006G085900--Sobic008G099900 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic005G210700 Sobic005G210700 Sobic006G085900--Sobic005G210700 Sobic002G251800--Sobic005G028300 Sobic007G038700 Sobic007G038700 Sobic002G251800--Sobic007G038700 Sobic002G251800--Sobic002G084400 Sobic006G271900 Sobic006G271900 Sobic002G251800--Sobic006G271900 Sobic001G040600 Sobic001G040600 Sobic002G251800--Sobic001G040600 Sobic002G251800--Sobic008G099900 Sobic002G251800--Sobic006G085900 Sobic007G060600 Sobic007G060600 Sobic002G251800--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic002G251800--Sobic001G049800 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic006G069100--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic008G179000 Sobic008G179000 Sobic008G031200--Sobic008G179000 Sobic001G268300 Sobic001G268300 Sobic008G031200--Sobic001G268300 Sobic010G252700 Sobic010G252700 Sobic008G031200--Sobic010G252700 Sobic002G362200 Sobic002G362200 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic008G031200--Sobic002G084400 Sobic001G537400 Sobic001G537400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic008G171500--Sobic004G256900 Sobic008G171500--Sobic002G084400 Sobic008G171500--Sobic002G362200 Sobic008G171500--Sobic010G232700 Sobic008G171500--Sobic008G031200 Sobic008G171500--Sobic002G172500 Sobic008G171500--Sobic004G241000 Sobic003G184300 Sobic003G184300 Sobic008G171500--Sobic003G184300 Sobic008G171500--Sobic006G069100 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic001G448100 Sobic001G448100 Sobic003G067201--Sobic001G448100 Sobic003G359400 Sobic003G359400 Sobic003G067201--Sobic003G359400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic010G091500 Sobic010G091500 Sobic003G067201--Sobic010G091500
Octagon: transcription factors


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