Gene annotation
Transcriptome id Sobic.010G232700.3,Sobic.010G232700.4,Sobic.010G232700.1,Sobic.010G232700.2
Synonym Sb10g027503
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1W0VUD1 , A0A194YM21
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF328
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03540 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os06g40860.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a018145
Brachypodium KQK17690
Barley -
Wheat TraesCS7D02G399200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.008G041000 expressed protein -
3 Sobic.006G085900 pentatricopeptide, putative, expressed -
4 Sobic.008G171500 PPR repeat containing protein, expressed -
5 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.006G069100 pentatricopeptide, putative, expressed -
8 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
10 Sobic.007G179600 pentatricopeptide, putative, expressed -
11 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
12 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
13 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
15 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
18 Sobic.001G149100 vegetative storage protein, putative, expressed -
19 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
20 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic010G232700 Sobic010G232700 Sobic002G084400 Sobic002G084400 Sobic010G232700--Sobic002G084400 Sobic008G041000 Sobic008G041000 Sobic010G232700--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic010G232700--Sobic006G085900 Sobic008G171500 Sobic008G171500 Sobic010G232700--Sobic008G171500 Sobic003G203100 Sobic003G203100 Sobic010G232700--Sobic003G203100 Sobic004G241000 Sobic004G241000 Sobic010G232700--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic010G232700--Sobic006G069100 Sobic005G028300 Sobic005G028300 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic002G084400--Sobic010G232700 Sobic002G084400--Sobic008G041000 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic002G084400--Sobic005G028300 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic008G041000--Sobic002G084400 Sobic008G041000--Sobic010G232700 Sobic008G041000--Sobic006G085900 Sobic008G041000--Sobic003G203100 Sobic008G041000--Sobic005G028300 Sobic008G041000--Sobic002G251800 Sobic002G389200 Sobic002G389200 Sobic008G041000--Sobic002G389200 Sobic009G134400 Sobic009G134400 Sobic008G041000--Sobic009G134400 Sobic008G041000--Sobic006G069100 Sobic006G085900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic006G085900--Sobic010G068900 Sobic009G155400 Sobic009G155400 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic006G085900--Sobic002G172500 Sobic008G099900 Sobic008G099900 Sobic006G085900--Sobic008G099900 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic005G210700 Sobic005G210700 Sobic006G085900--Sobic005G210700 Sobic008G171500--Sobic004G256900 Sobic008G171500--Sobic002G084400 Sobic002G362200 Sobic002G362200 Sobic008G171500--Sobic002G362200 Sobic008G171500--Sobic010G232700 Sobic008G171500--Sobic008G031200 Sobic008G171500--Sobic002G172500 Sobic008G171500--Sobic004G241000 Sobic003G184300 Sobic003G184300 Sobic008G171500--Sobic003G184300 Sobic008G171500--Sobic006G069100 Sobic003G203100--Sobic010G232700 Sobic003G203100--Sobic008G041000 Sobic003G203100--Sobic006G085900 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic003G203100--Sobic002G389200 Sobic001G490700 Sobic001G490700 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic003G203100--Sobic005G210700 Sobic008G163400 Sobic008G163400 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic010G190900 Sobic010G190900 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic003G239000 Sobic003G239000 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic004G256900--Sobic006G069100 Sobic006G262800 Sobic006G262800 Sobic004G256900--Sobic006G262800 Sobic004G256900--Sobic010G190900 Sobic001G478900 Sobic001G478900 Sobic004G256900--Sobic001G478900 Sobic004G256900--Sobic008G163400
Octagon: transcription factors


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