Gene annotation
Transcriptome id Sobic.008G171500.6,Sobic.008G171500.3,Sobic.008G171500.5,Sobic.008G171500.4
Synonym Sb08g021630
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1Z5R785 , A0A1Z5R775 , A0A1Z5R749
Pfam PF01535 PF13041 PF13041
Panther DB PTHR24015 PTHR24015:SF730
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30290 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os12g42120.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a025166
Brachypodium KQJ85777
Barley HORVU5Hr1G008760.2 , HORVU5Hr1G008760.3 , HORVU5Hr1G008760.4
Wheat TraesCS5B02G355600 , TraesCS5B02G355600 , TraesCS5A02G353200 , TraesCS5B02G033500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
4 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.008G031200 pentatricopeptide, putative, expressed -
6 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
7 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.006G069100 pentatricopeptide, putative, expressed -
10 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.001G361200 expressed protein -
12 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
14 Sobic.006G109400 pentatricopeptide, putative, expressed -
15 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
16 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
17 Sobic.006G085900 pentatricopeptide, putative, expressed -
18 Sobic.001G242300 expressed protein -
19 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
20 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1


Gene co-expression network
sample Sobic008G171500 Sobic008G171500 Sobic004G256900 Sobic004G256900 Sobic008G171500--Sobic004G256900 Sobic002G084400 Sobic002G084400 Sobic008G171500--Sobic002G084400 Sobic002G362200 Sobic002G362200 Sobic008G171500--Sobic002G362200 Sobic010G232700 Sobic010G232700 Sobic008G171500--Sobic010G232700 Sobic008G031200 Sobic008G031200 Sobic008G171500--Sobic008G031200 Sobic002G172500 Sobic002G172500 Sobic008G171500--Sobic002G172500 Sobic004G241000 Sobic004G241000 Sobic008G171500--Sobic004G241000 Sobic003G184300 Sobic003G184300 Sobic008G171500--Sobic003G184300 Sobic006G069100 Sobic006G069100 Sobic008G171500--Sobic006G069100 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic004G256900--Sobic006G069100 Sobic006G262800 Sobic006G262800 Sobic004G256900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic004G256900--Sobic010G190900 Sobic001G478900 Sobic001G478900 Sobic004G256900--Sobic001G478900 Sobic008G163400 Sobic008G163400 Sobic004G256900--Sobic008G163400 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic002G084400--Sobic006G069100 Sobic002G084400--Sobic008G031200 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic010G252700 Sobic010G252700 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic008G179000 Sobic008G179000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic001G268300 Sobic001G268300 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic010G232700--Sobic008G171500 Sobic003G203100 Sobic003G203100 Sobic010G232700--Sobic003G203100 Sobic010G232700--Sobic004G241000 Sobic010G232700--Sobic006G069100 Sobic010G232700--Sobic005G028300 Sobic010G232700--Sobic004G256900 Sobic008G031200--Sobic008G179000 Sobic008G031200--Sobic001G268300 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic008G031200--Sobic002G084400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic002G172500--Sobic004G256900 Sobic002G172500--Sobic006G262800 Sobic002G172500--Sobic004G241000 Sobic002G172500--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic002G172500--Sobic009G155400 Sobic002G172500--Sobic003G184300 Sobic002G172500--Sobic008G163400 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic003G239000 Sobic003G239000 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400 Sobic003G184300--Sobic004G256900 Sobic006G095000 Sobic006G095000 Sobic003G184300--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic003G184300--Sobic002G192900 Sobic001G361200 Sobic001G361200 Sobic003G184300--Sobic001G361200 Sobic003G184300--Sobic001G478900 Sobic003G184300--Sobic010G068900 Sobic003G184300--Sobic002G172500 Sobic010G188900 Sobic010G188900 Sobic003G184300--Sobic010G188900 Sobic004G064600 Sobic004G064600 Sobic003G184300--Sobic004G064600 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100
Octagon: transcription factors


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