Gene annotation
Transcriptome id Sobic.006G262800.1
Synonym Sb06g032560
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5YA56
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF674
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G50420 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os04g57670.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a057358
Brachypodium KQJ85420 , KQJ85240
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
2 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
3 Sobic.001G478900 pentatricopeptide, putative, expressed -
4 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
5 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
6 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
7 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
8 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
9 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G436600 pentatricopeptide, putative, expressed -
12 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
13 Sobic.004G282500 PPR repeat domain containing protein, putative, expressed -
14 Sobic.003G142400 pentatricopeptide, putative, expressed -
15 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
16 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
17 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
18 Sobic.006G085900 pentatricopeptide, putative, expressed -
19 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
20 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic006G262800 Sobic006G262800 Sobic010G068900 Sobic010G068900 Sobic006G262800--Sobic010G068900 Sobic009G154900 Sobic009G154900 Sobic006G262800--Sobic009G154900 Sobic001G478900 Sobic001G478900 Sobic006G262800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G262800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G262800--Sobic002G172500 Sobic008G163400 Sobic008G163400 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic001G268300 Sobic001G268300 Sobic006G262800--Sobic001G268300 Sobic004G241000 Sobic004G241000 Sobic006G262800--Sobic004G241000 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic010G068900--Sobic010G190900 Sobic010G068900--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic010G068900--Sobic006G069100 Sobic006G085900 Sobic006G085900 Sobic010G068900--Sobic006G085900 Sobic003G184300 Sobic003G184300 Sobic010G068900--Sobic003G184300 Sobic010G068900--Sobic001G478900 Sobic009G154900--Sobic006G262800 Sobic001G043200 Sobic001G043200 Sobic009G154900--Sobic001G043200 Sobic003G194800 Sobic003G194800 Sobic009G154900--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G154900--Sobic004G215600 Sobic004G007900 Sobic004G007900 Sobic009G154900--Sobic004G007900 Sobic009G108400 Sobic009G108400 Sobic009G154900--Sobic009G108400 Sobic004G194100 Sobic004G194100 Sobic009G154900--Sobic004G194100 Sobic001G448100 Sobic001G448100 Sobic009G154900--Sobic001G448100 Sobic005G123400 Sobic005G123400 Sobic009G154900--Sobic005G123400 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic001G478900--Sobic006G262800 Sobic001G478900--Sobic004G256900 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic004G256900--Sobic010G190900 Sobic004G256900--Sobic001G478900 Sobic004G256900--Sobic008G163400 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic002G172500--Sobic004G256900 Sobic002G172500--Sobic006G262800 Sobic002G172500--Sobic004G241000 Sobic002G172500--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic002G172500--Sobic009G155400 Sobic002G172500--Sobic003G184300 Sobic002G172500--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic008G163400--Sobic003G239000 Sobic008G163400--Sobic004G241000 Sobic008G163400--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic008G163400--Sobic009G116400 Sobic008G163400--Sobic004G256900 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic002G267600 Sobic002G267600 Sobic008G163400--Sobic002G267600 Sobic001G149100 Sobic001G149100 Sobic008G163400--Sobic001G149100 Sobic001G052100--Sobic005G123400 Sobic008G039000 Sobic008G039000 Sobic001G052100--Sobic008G039000 Sobic001G203600 Sobic001G203600 Sobic001G052100--Sobic001G203600 Sobic010G112600 Sobic010G112600 Sobic001G052100--Sobic010G112600 Sobic006G237500 Sobic006G237500 Sobic001G052100--Sobic006G237500 Sobic001G052100--Sobic006G262800 Sobic009G227100 Sobic009G227100 Sobic001G052100--Sobic009G227100 Sobic001G052100--Sobic001G478900 Sobic001G052100--Sobic008G095900 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic001G268300--Sobic006G262800 Sobic002G362200 Sobic002G362200 Sobic001G268300--Sobic002G362200 Sobic008G031200 Sobic008G031200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400
Octagon: transcription factors


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