Gene annotation
Transcriptome id Sobic.001G436600.1,Sobic.001G436600.3,Sobic.001G436600.2
Synonym OTP82, Sb01g041070
Functional annotation pentatricopeptide, putative, expressed
UniProt C5WQX9
Pfam PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF532
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08070 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os12g01850.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a001570
Brachypodium PNT75833 , PNT75832 , PNT75831 , KQK18097
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.006G085900 pentatricopeptide, putative, expressed -
3 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
5 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
8 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
9 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
11 Sobic.004G007900 SNF2 family N-terminal domain containing protein, expressed K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
12 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
14 Sobic.010G190900 pentatricopeptide, putative, expressed -
15 Sobic.006G069100 pentatricopeptide, putative, expressed -
16 Sobic.008G031200 pentatricopeptide, putative, expressed -
17 Sobic.009G253101 - -
18 Sobic.006G220400 exonuclease, putative, expressed -
19 Sobic.001G478900 pentatricopeptide, putative, expressed -
20 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic001G436600 Sobic001G436600 Sobic004G256900 Sobic004G256900 Sobic001G436600--Sobic004G256900 Sobic006G085900 Sobic006G085900 Sobic001G436600--Sobic006G085900 Sobic006G262800 Sobic006G262800 Sobic001G436600--Sobic006G262800 Sobic009G154900 Sobic009G154900 Sobic001G436600--Sobic009G154900 Sobic004G241000 Sobic004G241000 Sobic001G436600--Sobic004G241000 Sobic006G085800 Sobic006G085800 Sobic001G436600--Sobic006G085800 Sobic010G068900 Sobic010G068900 Sobic001G436600--Sobic010G068900 Sobic004G215600 Sobic004G215600 Sobic001G436600--Sobic004G215600 Sobic006G095000 Sobic006G095000 Sobic001G436600--Sobic006G095000 Sobic003G184300 Sobic003G184300 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic002G172500 Sobic002G172500 Sobic004G256900--Sobic002G172500 Sobic006G069100 Sobic006G069100 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic004G256900--Sobic010G190900 Sobic001G478900 Sobic001G478900 Sobic004G256900--Sobic001G478900 Sobic008G163400 Sobic008G163400 Sobic004G256900--Sobic008G163400 Sobic006G085900--Sobic004G241000 Sobic006G085900--Sobic010G068900 Sobic009G155400 Sobic009G155400 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic006G085900--Sobic002G172500 Sobic008G099900 Sobic008G099900 Sobic006G085900--Sobic008G099900 Sobic002G084400 Sobic002G084400 Sobic006G085900--Sobic002G084400 Sobic006G085900--Sobic001G436600 Sobic005G210700 Sobic005G210700 Sobic006G085900--Sobic005G210700 Sobic006G262800--Sobic010G068900 Sobic006G262800--Sobic009G154900 Sobic006G262800--Sobic001G478900 Sobic006G262800--Sobic004G256900 Sobic006G262800--Sobic002G172500 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic001G268300 Sobic001G268300 Sobic006G262800--Sobic001G268300 Sobic006G262800--Sobic004G241000 Sobic009G154900--Sobic006G262800 Sobic001G043200 Sobic001G043200 Sobic009G154900--Sobic001G043200 Sobic003G194800 Sobic003G194800 Sobic009G154900--Sobic003G194800 Sobic009G154900--Sobic004G215600 Sobic004G007900 Sobic004G007900 Sobic009G154900--Sobic004G007900 Sobic009G108400 Sobic009G108400 Sobic009G154900--Sobic009G108400 Sobic004G194100 Sobic004G194100 Sobic009G154900--Sobic004G194100 Sobic001G448100 Sobic001G448100 Sobic009G154900--Sobic001G448100 Sobic005G123400 Sobic005G123400 Sobic009G154900--Sobic005G123400 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic003G239000 Sobic003G239000 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400 Sobic006G085800--Sobic001G436600 Sobic006G085800--Sobic001G478900 Sobic006G085800--Sobic004G256900 Sobic006G085800--Sobic002G172500 Sobic006G085800--Sobic006G085900 Sobic006G085800--Sobic010G068900 Sobic006G085800--Sobic010G190900 Sobic006G085800--Sobic006G262800 Sobic006G085800--Sobic006G095000 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G068900--Sobic010G190900 Sobic010G068900--Sobic004G241000 Sobic010G068900--Sobic006G069100 Sobic010G068900--Sobic006G085900 Sobic010G068900--Sobic003G184300 Sobic010G068900--Sobic001G478900 Sobic009G120400 Sobic009G120400 Sobic004G215600--Sobic009G120400 Sobic004G215600--Sobic003G194800 Sobic008G047500 Sobic008G047500 Sobic004G215600--Sobic008G047500 Sobic007G186400 Sobic007G186400 Sobic004G215600--Sobic007G186400 Sobic008G095900 Sobic008G095900 Sobic004G215600--Sobic008G095900 Sobic004G215600--Sobic006G095000 Sobic008G085950 Sobic008G085950 Sobic004G215600--Sobic008G085950 Sobic002G173400 Sobic002G173400 Sobic004G215600--Sobic002G173400 Sobic004G215600--Sobic001G043200 Sobic006G095000--Sobic003G184300 Sobic002G192900 Sobic002G192900 Sobic006G095000--Sobic002G192900 Sobic004G064600 Sobic004G064600 Sobic006G095000--Sobic004G064600 Sobic006G095000--Sobic008G047500 Sobic006G095000--Sobic004G215600 Sobic001G323400 Sobic001G323400 Sobic006G095000--Sobic001G323400 Sobic002G308000 Sobic002G308000 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic006G095000--Sobic009G120400
Octagon: transcription factors


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