Gene annotation
Transcriptome id Sobic.001G478900.5,Sobic.001G478900.7,Sobic.001G478900.6,Sobic.001G478900.3,Sobic.001G478900.2,Sobic.001G478900.4,Sobic.001G478900.8
Synonym Sb01g044860, DOT4
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1Z5SB58
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF782
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18750 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g08680.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a053243
Brachypodium KQK23259
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
2 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
4 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G047700 E3 ubiquitin-protein ligase SINA-like 2, putative, expressed -
6 Sobic.004G051600 EMB2758, putative, expressed -
7 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
8 Sobic.009G253101 - -
9 Sobic.010G123100 transporter-related, putative, expressed -
10 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
12 Sobic.004G194400 expressed protein -
13 Sobic.001G486900 exostosin family protein, putative, expressed -
14 Sobic.007G106600 - -
15 Sobic.003G142400 pentatricopeptide, putative, expressed -
16 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
17 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
19 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.005G123400 expressed protein -


Gene co-expression network
sample Sobic001G478900 Sobic001G478900 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic006G262800 Sobic006G262800 Sobic001G478900--Sobic006G262800 Sobic004G256900 Sobic004G256900 Sobic001G478900--Sobic004G256900 Sobic003G184300 Sobic003G184300 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic010G068900 Sobic010G068900 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic004G194400 Sobic004G194400 Sobic008G095900--Sobic004G194400 Sobic001G308500 Sobic001G308500 Sobic008G095900--Sobic001G308500 Sobic008G095900--Sobic004G051600 Sobic008G095900--Sobic001G478900 Sobic008G085950 Sobic008G085950 Sobic008G095900--Sobic008G085950 Sobic006G191000 Sobic006G191000 Sobic008G095900--Sobic006G191000 Sobic010G086300 Sobic010G086300 Sobic008G095900--Sobic010G086300 Sobic006G071362 Sobic006G071362 Sobic008G095900--Sobic006G071362 Sobic003G004800 Sobic003G004800 Sobic008G095900--Sobic003G004800 Sobic006G262800--Sobic010G068900 Sobic009G154900 Sobic009G154900 Sobic006G262800--Sobic009G154900 Sobic006G262800--Sobic001G478900 Sobic006G262800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G262800--Sobic002G172500 Sobic008G163400 Sobic008G163400 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic001G268300 Sobic001G268300 Sobic006G262800--Sobic001G268300 Sobic004G241000 Sobic004G241000 Sobic006G262800--Sobic004G241000 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic006G069100 Sobic006G069100 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic004G256900--Sobic010G190900 Sobic004G256900--Sobic001G478900 Sobic004G256900--Sobic008G163400 Sobic003G184300--Sobic004G256900 Sobic006G095000 Sobic006G095000 Sobic003G184300--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic003G184300--Sobic002G192900 Sobic001G361200 Sobic001G361200 Sobic003G184300--Sobic001G361200 Sobic003G184300--Sobic001G478900 Sobic003G184300--Sobic010G068900 Sobic003G184300--Sobic002G172500 Sobic010G188900 Sobic010G188900 Sobic003G184300--Sobic010G188900 Sobic004G064600 Sobic004G064600 Sobic003G184300--Sobic004G064600 Sobic009G047700--Sobic001G478900 Sobic003G091600 Sobic003G091600 Sobic009G047700--Sobic003G091600 Sobic009G047700--Sobic001G052100 Sobic007G106600 Sobic007G106600 Sobic009G047700--Sobic007G106600 Sobic009G227100 Sobic009G227100 Sobic009G047700--Sobic009G227100 Sobic005G123400 Sobic005G123400 Sobic009G047700--Sobic005G123400 Sobic001G529500 Sobic001G529500 Sobic009G047700--Sobic001G529500 Sobic004G189000 Sobic004G189000 Sobic009G047700--Sobic004G189000 Sobic009G047700--Sobic004G051600 Sobic003G057050 Sobic003G057050 Sobic004G051600--Sobic003G057050 Sobic002G362500 Sobic002G362500 Sobic004G051600--Sobic002G362500 Sobic004G051600--Sobic008G095900 Sobic002G414800 Sobic002G414800 Sobic004G051600--Sobic002G414800 Sobic008G166100 Sobic008G166100 Sobic004G051600--Sobic008G166100 Sobic004G051600--Sobic001G308500 Sobic009G163100 Sobic009G163100 Sobic004G051600--Sobic009G163100 Sobic006G219801 Sobic006G219801 Sobic004G051600--Sobic006G219801 Sobic004G051600--Sobic006G071362 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G068900--Sobic010G190900 Sobic010G068900--Sobic004G241000 Sobic010G068900--Sobic006G069100 Sobic006G085900 Sobic006G085900 Sobic010G068900--Sobic006G085900 Sobic010G068900--Sobic003G184300 Sobic010G068900--Sobic001G478900 Sobic009G253101--Sobic010G190900 Sobic009G253101--Sobic001G478900 Sobic009G253101--Sobic010G068900 Sobic009G253101--Sobic004G241000 Sobic009G253101--Sobic004G256900 Sobic009G253101--Sobic006G262800 Sobic006G262700 Sobic006G262700 Sobic009G253101--Sobic006G262700 Sobic009G253101--Sobic002G172500 Sobic009G253101--Sobic006G085900 Sobic004G353300 Sobic004G353300 Sobic010G123100--Sobic004G353300 Sobic004G298600 Sobic004G298600 Sobic010G123100--Sobic004G298600 Sobic010G274800 Sobic010G274800 Sobic010G123100--Sobic010G274800 Sobic010G123100--Sobic008G095900 Sobic010G123100--Sobic001G308500 Sobic001G385300 Sobic001G385300 Sobic010G123100--Sobic001G385300 Sobic010G123100--Sobic008G085950 Sobic007G105700 Sobic007G105700 Sobic010G123100--Sobic007G105700 Sobic006G265800 Sobic006G265800 Sobic010G123100--Sobic006G265800
Octagon: transcription factors


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