Gene annotation
Transcriptome id Sobic.004G215600.3,Sobic.004G215600.2,Sobic.004G215600.1
Synonym RCK, MER3
Functional annotation -
UniProt A0A1Z5RNQ5 , A0A1Z5RPK0 , A0A1Z5RPE6
Pfam PF00271 PF00270 PF02889
Panther DB PTHR24031 PTHR24031:SF145
NCBI CDD KOG0345; ATP-dependent RNA helicase
KEGG Orthology K15271; HFM1, ATP-dependent DNA helicase HFM1/MER3
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G27730 : ATP binding;ATP-dependent helicases;DNA helicases
RAP-DB (Rice) LOC_Os02g40450.1 : DEAD/DEAH box helicase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a031981
Brachypodium PNT69076 , KQK00359
Barley HORVU1Hr1G079310.13 , HORVU1Hr1G079310.12 , HORVU1Hr1G079310.11 , HORVU1Hr1G079310.10 , HORVU1Hr1G079310.14 , HORVU4Hr1G049830.19 , HORVU6Hr1G047970.56 , HORVU6Hr1G047970.53 , HORVU6Hr1G047970.59 , HORVU4Hr1G049830.49 , HORVU4Hr1G049830.48 , HORVU4Hr1G049830.41 , HORVU4Hr1G049830.40 , HORVU4Hr1G049830.42 , HORVU4Hr1G049830.45 , HORVU4Hr1G049830.44 , HORVU4Hr1G049830.47 , HORVU6Hr1G047970.11 , HORVU6Hr1G047970.13 , HORVU6Hr1G047970.12 , HORVU6Hr1G047970.17 , HORVU6Hr1G047970.19 , HORVU6Hr1G047970.18 , HORVU5Hr1G011820.1 , HORVU6Hr1G047970.14 , HORVU4Hr1G049830.13 , HORVU4Hr1G049830.16 , HORVU4Hr1G049830.14 , HORVU4Hr1G049830.15 , HORVU4Hr1G049830.18 , HORVU7Hr1G056210.3 , HORVU7Hr1G056210.2 , HORVU7Hr1G056210.1 , HORVU6Hr1G047970.49 , HORVU6Hr1G047970.41 , HORVU6Hr1G047970.47 , HORVU4Hr1G049830.58 , HORVU4Hr1G049830.59 , HORVU4Hr1G049830.56 , HORVU4Hr1G049830.57 , HORVU4Hr1G049830.54 , HORVU4Hr1G049830.55 , HORVU4Hr1G049830.52 , HORVU4Hr1G049830.51 , HORVU4Hr1G049830.28 , HORVU4Hr1G049830.22 , HORVU4Hr1G049830.21 , HORVU4Hr1G049830.20 , HORVU4Hr1G049830.27 , HORVU4Hr1G049830.26 , HORVU4Hr1G049830.24 , HORVU6Hr1G047970.73 , HORVU6Hr1G047970.71 , HORVU6Hr1G047970.70 , HORVU6Hr1G047970.76 , HORVU6Hr1G047970.75 , HORVU6Hr1G047970.74 , HORVU6Hr1G047970.78 , HORVU4Hr1G049830.8 , HORVU4Hr1G049830.9 , HORVU4Hr1G049830.1 , HORVU4Hr1G049830.5 , HORVU4Hr1G049830.6 , HORVU4Hr1G049830.7 , HORVU2Hr1G056280.11 , HORVU2Hr1G056280.10 , HORVU2Hr1G056280.13 , HORVU2Hr1G056280.12 , HORVU2Hr1G056280.15 , HORVU2Hr1G056280.14 , HORVU4Hr1G049830.67 , HORVU4Hr1G049830.66 , HORVU4Hr1G049830.65 , HORVU4Hr1G049830.64 , HORVU4Hr1G049830.63 , HORVU4Hr1G049830.62 , HORVU4Hr1G049830.61 , HORVU4Hr1G049830.60 , HORVU3Hr1G060630.1 , HORVU3Hr1G060630.2 , HORVU4Hr1G049830.68 , HORVU2Hr1G056280.5 , HORVU2Hr1G056280.4 , HORVU2Hr1G056280.7 , HORVU2Hr1G056280.6 , HORVU2Hr1G056280.1 , HORVU2Hr1G056280.3 , HORVU2Hr1G056280.2 , HORVU2Hr1G056280.9 , HORVU2Hr1G056280.8 , HORVU6Hr1G047970.5 , HORVU6Hr1G047970.7 , HORVU6Hr1G047970.6 , HORVU6Hr1G047970.3 , HORVU6Hr1G047970.2 , HORVU6Hr1G047970.9 , HORVU6Hr1G047970.8 , HORVU6Hr1G047970.39 , HORVU6Hr1G047970.36 , HORVU6Hr1G047970.34 , HORVU6Hr1G047970.33 , HORVU6Hr1G047970.32 , HORVU6Hr1G047970.30 , HORVU4Hr1G049830.38 , HORVU4Hr1G049830.39 , HORVU4Hr1G049830.31 , HORVU4Hr1G049830.32 , HORVU4Hr1G049830.33 , HORVU4Hr1G049830.34 , HORVU4Hr1G049830.35 , HORVU4Hr1G049830.36 , HORVU4Hr1G049830.37 , HORVU2Hr1G039600.2 , HORVU2Hr1G039600.1 , HORVU6Hr1G047970.60 , HORVU6Hr1G047970.61 , HORVU6Hr1G047970.62 , HORVU6Hr1G047970.63 , HORVU6Hr1G047970.64 , HORVU6Hr1G047970.66 , HORVU6Hr1G047970.67 , HORVU6Hr1G047970.68 , HORVU1Hr1G079310.9 , HORVU1Hr1G079310.8 , HORVU1Hr1G079310.3 , HORVU1Hr1G079310.2 , HORVU1Hr1G079310.1 , HORVU1Hr1G079310.7 , HORVU1Hr1G079310.5 , HORVU1Hr1G079310.4 , HORVU6Hr1G047970.24 , HORVU6Hr1G047970.25 , HORVU6Hr1G047970.27 , HORVU6Hr1G047970.20 , HORVU6Hr1G047970.21 , HORVU6Hr1G047970.22 , HORVU6Hr1G047970.23 , HORVU5Hr1G083270.1 , HORVU5Hr1G083270.2
Wheat TraesCS4D02G171000 , TraesCS4B02G168700 , TraesCS4A02G136200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G120400 methyltransferase, putative, expressed -
2 Sobic.003G194800 EF hand family protein, putative, expressed -
3 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.007G186400 resistance protein, putative, expressed -
5 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
6 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
7 Sobic.008G085950 - -
8 Sobic.002G173400 expressed protein -
9 Sobic.001G043200 expressed protein -
10 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
11 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
12 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
13 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
14 Sobic.006G106600 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
15 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
18 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
19 Sobic.001G433600 - -
20 Sobic.005G060100 growth regulator related protein, putative, expressed -


Gene co-expression network
sample Sobic004G215600 Sobic004G215600 Sobic009G120400 Sobic009G120400 Sobic004G215600--Sobic009G120400 Sobic003G194800 Sobic003G194800 Sobic004G215600--Sobic003G194800 Sobic008G047500 Sobic008G047500 Sobic004G215600--Sobic008G047500 Sobic007G186400 Sobic007G186400 Sobic004G215600--Sobic007G186400 Sobic008G095900 Sobic008G095900 Sobic004G215600--Sobic008G095900 Sobic006G095000 Sobic006G095000 Sobic004G215600--Sobic006G095000 Sobic008G085950 Sobic008G085950 Sobic004G215600--Sobic008G085950 Sobic002G173400 Sobic002G173400 Sobic004G215600--Sobic002G173400 Sobic001G043200 Sobic001G043200 Sobic004G215600--Sobic001G043200 Sobic009G120400--Sobic002G173400 Sobic002G426100 Sobic002G426100 Sobic009G120400--Sobic002G426100 Sobic007G034200 Sobic007G034200 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic009G120400--Sobic004G215600 Sobic007G105700 Sobic007G105700 Sobic009G120400--Sobic007G105700 Sobic003G299500 Sobic003G299500 Sobic009G120400--Sobic003G299500 Sobic009G120400--Sobic007G186400 Sobic001G051400 Sobic001G051400 Sobic009G120400--Sobic001G051400 Sobic003G194800--Sobic008G085950 Sobic003G194800--Sobic008G047500 Sobic003G194800--Sobic009G120400 Sobic003G204100 Sobic003G204100 Sobic003G194800--Sobic003G204100 Sobic003G194800--Sobic002G173400 Sobic003G194800--Sobic003G299500 Sobic003G194800--Sobic007G105700 Sobic003G194800--Sobic004G215600 Sobic003G420400 Sobic003G420400 Sobic003G194800--Sobic003G420400 Sobic008G047500--Sobic008G085950 Sobic008G047500--Sobic003G204100 Sobic008G047500--Sobic003G194800 Sobic007G102000 Sobic007G102000 Sobic008G047500--Sobic007G102000 Sobic002G390800 Sobic002G390800 Sobic008G047500--Sobic002G390800 Sobic008G047500--Sobic002G173400 Sobic004G298600 Sobic004G298600 Sobic008G047500--Sobic004G298600 Sobic008G047500--Sobic007G105700 Sobic010G009700 Sobic010G009700 Sobic008G047500--Sobic010G009700 Sobic007G186400--Sobic009G120400 Sobic007G186400--Sobic004G215600 Sobic002G308000 Sobic002G308000 Sobic007G186400--Sobic002G308000 Sobic004G000400 Sobic004G000400 Sobic007G186400--Sobic004G000400 Sobic007G186400--Sobic008G047500 Sobic007G186400--Sobic002G173400 Sobic006G106600 Sobic006G106600 Sobic007G186400--Sobic006G106600 Sobic007G186400--Sobic002G426100 Sobic007G186400--Sobic007G105700 Sobic004G194400 Sobic004G194400 Sobic008G095900--Sobic004G194400 Sobic001G308500 Sobic001G308500 Sobic008G095900--Sobic001G308500 Sobic004G051600 Sobic004G051600 Sobic008G095900--Sobic004G051600 Sobic001G478900 Sobic001G478900 Sobic008G095900--Sobic001G478900 Sobic008G095900--Sobic008G085950 Sobic006G191000 Sobic006G191000 Sobic008G095900--Sobic006G191000 Sobic010G086300 Sobic010G086300 Sobic008G095900--Sobic010G086300 Sobic006G071362 Sobic006G071362 Sobic008G095900--Sobic006G071362 Sobic003G004800 Sobic003G004800 Sobic008G095900--Sobic003G004800 Sobic003G184300 Sobic003G184300 Sobic006G095000--Sobic003G184300 Sobic002G192900 Sobic002G192900 Sobic006G095000--Sobic002G192900 Sobic004G064600 Sobic004G064600 Sobic006G095000--Sobic004G064600 Sobic006G095000--Sobic008G047500 Sobic006G095000--Sobic004G215600 Sobic001G323400 Sobic001G323400 Sobic006G095000--Sobic001G323400 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic006G095000--Sobic009G120400 Sobic008G085950--Sobic001G308500 Sobic007G043700 Sobic007G043700 Sobic008G085950--Sobic007G043700 Sobic008G085950--Sobic007G102000 Sobic008G085950--Sobic007G105700 Sobic008G085950--Sobic003G194800 Sobic008G085950--Sobic008G047500 Sobic001G385300 Sobic001G385300 Sobic008G085950--Sobic001G385300 Sobic001G327100 Sobic001G327100 Sobic008G085950--Sobic001G327100 Sobic005G060100 Sobic005G060100 Sobic008G085950--Sobic005G060100 Sobic008G131900 Sobic008G131900 Sobic002G173400--Sobic008G131900 Sobic002G173400--Sobic009G120400 Sobic002G173400--Sobic003G194800 Sobic002G173400--Sobic008G047500 Sobic002G052800 Sobic002G052800 Sobic002G173400--Sobic002G052800 Sobic010G038200 Sobic010G038200 Sobic002G173400--Sobic010G038200 Sobic010G143600 Sobic010G143600 Sobic002G173400--Sobic010G143600 Sobic002G173400--Sobic004G000400 Sobic002G173400--Sobic005G060100 Sobic005G123400 Sobic005G123400 Sobic001G043200--Sobic005G123400 Sobic003G190200 Sobic003G190200 Sobic001G043200--Sobic003G190200 Sobic003G021600 Sobic003G021600 Sobic001G043200--Sobic003G021600 Sobic003G394500 Sobic003G394500 Sobic001G043200--Sobic003G394500 Sobic009G122500 Sobic009G122500 Sobic001G043200--Sobic009G122500 Sobic007G030100 Sobic007G030100 Sobic001G043200--Sobic007G030100 Sobic004G122900 Sobic004G122900 Sobic001G043200--Sobic004G122900 Sobic009G154900 Sobic009G154900 Sobic001G043200--Sobic009G154900 Sobic001G043200--Sobic003G194800
Octagon: transcription factors


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