Gene annotation
Transcriptome id Sobic.006G237500.1
Synonym Sb06g030430
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5Y902
Pfam PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF812
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80550 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os04g55090.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009571
Brachypodium PNT61983 , KQJ84917
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G123400 expressed protein -
2 Sobic.003G393200 expressed protein -
3 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
4 Sobic.010G112600 integral membrane protein, putative, expressed -
5 Sobic.004G353300 growth regulator related protein, putative, expressed -
6 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
7 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
8 Sobic.003G194800 EF hand family protein, putative, expressed -
9 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
10 Sobic.003G190200 Sec1 family transport protein, putative, expressed -
11 Sobic.002G342300 exostosin family domain containing protein, expressed -
12 Sobic.005G087300 protein kinase family protein, putative, expressed -
13 Sobic.001G043200 expressed protein -
14 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
15 Sobic.006G220400 exonuclease, putative, expressed -
16 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
17 Sobic.003G113300 expressed protein -
18 Sobic.002G147200 esterase/lipase/thioesterase, putative, expressed -
19 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
20 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -


Gene co-expression network
sample Sobic006G237500 Sobic006G237500 Sobic005G123400 Sobic005G123400 Sobic006G237500--Sobic005G123400 Sobic003G393200 Sobic003G393200 Sobic006G237500--Sobic003G393200 Sobic007G030100 Sobic007G030100 Sobic006G237500--Sobic007G030100 Sobic010G112600 Sobic010G112600 Sobic006G237500--Sobic010G112600 Sobic004G353300 Sobic004G353300 Sobic006G237500--Sobic004G353300 Sobic001G052100 Sobic001G052100 Sobic006G237500--Sobic001G052100 Sobic001G051400 Sobic001G051400 Sobic006G237500--Sobic001G051400 Sobic003G194800 Sobic003G194800 Sobic006G237500--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic006G237500--Sobic004G215600 Sobic005G123400--Sobic006G237500 Sobic005G123400--Sobic010G112600 Sobic005G123400--Sobic003G393200 Sobic001G043200 Sobic001G043200 Sobic005G123400--Sobic001G043200 Sobic009G227100 Sobic009G227100 Sobic005G123400--Sobic009G227100 Sobic009G252300 Sobic009G252300 Sobic005G123400--Sobic009G252300 Sobic005G123400--Sobic007G030100 Sobic003G190200 Sobic003G190200 Sobic005G123400--Sobic003G190200 Sobic003G368400 Sobic003G368400 Sobic005G123400--Sobic003G368400 Sobic003G393200--Sobic003G190200 Sobic003G393200--Sobic005G123400 Sobic003G393200--Sobic001G051400 Sobic003G393200--Sobic006G237500 Sobic002G066800 Sobic002G066800 Sobic003G393200--Sobic002G066800 Sobic005G087300 Sobic005G087300 Sobic003G393200--Sobic005G087300 Sobic003G393200--Sobic001G043200 Sobic001G343000 Sobic001G343000 Sobic003G393200--Sobic001G343000 Sobic009G059400 Sobic009G059400 Sobic003G393200--Sobic009G059400 Sobic007G030100--Sobic003G190200 Sobic002G147200 Sobic002G147200 Sobic007G030100--Sobic002G147200 Sobic003G394500 Sobic003G394500 Sobic007G030100--Sobic003G394500 Sobic003G117800 Sobic003G117800 Sobic007G030100--Sobic003G117800 Sobic001G385000 Sobic001G385000 Sobic007G030100--Sobic001G385000 Sobic007G172700 Sobic007G172700 Sobic007G030100--Sobic007G172700 Sobic001G424800 Sobic001G424800 Sobic007G030100--Sobic001G424800 Sobic006G232800 Sobic006G232800 Sobic007G030100--Sobic006G232800 Sobic003G428000 Sobic003G428000 Sobic007G030100--Sobic003G428000 Sobic010G112600--Sobic005G123400 Sobic010G112600--Sobic003G117800 Sobic004G194400 Sobic004G194400 Sobic010G112600--Sobic004G194400 Sobic010G277700 Sobic010G277700 Sobic010G112600--Sobic010G277700 Sobic010G112600--Sobic003G190200 Sobic010G112600--Sobic009G252300 Sobic010G112600--Sobic003G394500 Sobic010G112600--Sobic006G237500 Sobic008G155400 Sobic008G155400 Sobic010G112600--Sobic008G155400 Sobic001G433600 Sobic001G433600 Sobic004G353300--Sobic001G433600 Sobic007G189100 Sobic007G189100 Sobic004G353300--Sobic007G189100 Sobic007G105700 Sobic007G105700 Sobic004G353300--Sobic007G105700 Sobic002G392400 Sobic002G392400 Sobic004G353300--Sobic002G392400 Sobic010G123100 Sobic010G123100 Sobic004G353300--Sobic010G123100 Sobic002G308000 Sobic002G308000 Sobic004G353300--Sobic002G308000 Sobic005G067966 Sobic005G067966 Sobic004G353300--Sobic005G067966 Sobic001G308500 Sobic001G308500 Sobic004G353300--Sobic001G308500 Sobic008G085950 Sobic008G085950 Sobic004G353300--Sobic008G085950 Sobic001G052100--Sobic005G123400 Sobic008G039000 Sobic008G039000 Sobic001G052100--Sobic008G039000 Sobic001G203600 Sobic001G203600 Sobic001G052100--Sobic001G203600 Sobic001G052100--Sobic010G112600 Sobic001G052100--Sobic006G237500 Sobic006G262800 Sobic006G262800 Sobic001G052100--Sobic006G262800 Sobic001G052100--Sobic009G227100 Sobic001G478900 Sobic001G478900 Sobic001G052100--Sobic001G478900 Sobic008G095900 Sobic008G095900 Sobic001G052100--Sobic008G095900 Sobic001G051400--Sobic002G066800 Sobic007G034200 Sobic007G034200 Sobic001G051400--Sobic007G034200 Sobic001G051400--Sobic003G393200 Sobic003G010900 Sobic003G010900 Sobic001G051400--Sobic003G010900 Sobic009G120400 Sobic009G120400 Sobic001G051400--Sobic009G120400 Sobic006G191200 Sobic006G191200 Sobic001G051400--Sobic006G191200 Sobic001G051400--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic001G051400--Sobic002G078100 Sobic001G051400--Sobic005G123400 Sobic003G194800--Sobic008G085950 Sobic008G047500 Sobic008G047500 Sobic003G194800--Sobic008G047500 Sobic003G194800--Sobic009G120400 Sobic003G204100 Sobic003G204100 Sobic003G194800--Sobic003G204100 Sobic002G173400 Sobic002G173400 Sobic003G194800--Sobic002G173400 Sobic003G299500 Sobic003G299500 Sobic003G194800--Sobic003G299500 Sobic003G194800--Sobic007G105700 Sobic003G194800--Sobic004G215600 Sobic003G420400 Sobic003G420400 Sobic003G194800--Sobic003G420400 Sobic004G215600--Sobic009G120400 Sobic004G215600--Sobic003G194800 Sobic004G215600--Sobic008G047500 Sobic007G186400 Sobic007G186400 Sobic004G215600--Sobic007G186400 Sobic004G215600--Sobic008G095900 Sobic006G095000 Sobic006G095000 Sobic004G215600--Sobic006G095000 Sobic004G215600--Sobic008G085950 Sobic004G215600--Sobic002G173400 Sobic004G215600--Sobic001G043200
Octagon: transcription factors


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