Gene annotation
Transcriptome id Sobic.006G191200.2,Sobic.006G191200.1
Synonym
Functional annotation tRNA-splicing endonuclease positive effector-related, putative, expressed
UniProt A0A1Z5RFJ3 , A0A1B6PMT1
Pfam PF13245 PF13087
Panther DB PTHR10887 PTHR10887:SF373
NCBI CDD KOG1801; tRNA-splicing endonuclease positive effector (SEN1)
KEGG Orthology K10706; SETX, senataxin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65810 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g49310.1 : tRNA-splicing endonuclease positive effector-related, putative, expressed
MaizeGDB (Corn) Zm00025a056682 , Zm00025a015423 , Zm00025a010073
Brachypodium -
Barley HORVU2Hr1G093800.1 , HORVU2Hr1G093800.2 , HORVU2Hr1G093800.3 , HORVU2Hr1G093800.4 , HORVU2Hr1G093800.5 , HORVU2Hr1G093800.7 , HORVU2Hr1G093800.8 , HORVU2Hr1G093840.4 , HORVU2Hr1G093840.5 , HORVU2Hr1G093840.6 , HORVU2Hr1G093840.1 , HORVU2Hr1G093840.2
Wheat TraesCS2B02G412200 , TraesCS2A02G394300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
2 Sobic.002G296400 E3 ubiquitin-protein ligase HERC2, putative, expressed -
3 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
4 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
5 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
6 Sobic.003G299500 expressed protein -
7 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
8 Sobic.009G120400 methyltransferase, putative, expressed -
9 Sobic.004G097900 expressed protein -
10 Sobic.002G292800 MORN repeat domain containing protein, expressed -
11 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
12 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
13 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
14 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
15 Sobic.006G245900 FAR1 family protein, expressed -
16 Sobic.002G381900 expressed protein -
17 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
18 Sobic.003G432800 CRS1/YhbY domain containing protein, putative, expressed -
19 Sobic.003G194800 EF hand family protein, putative, expressed -
20 Sobic.002G182000 cwfJ-like family protein, putative, expressed -


Gene co-expression network
sample Sobic006G191200 Sobic006G191200 Sobic001G123600 Sobic001G123600 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic001G051400 Sobic001G051400 Sobic006G191200--Sobic001G051400 Sobic002G078100 Sobic002G078100 Sobic006G191200--Sobic002G078100 Sobic002G066800 Sobic002G066800 Sobic006G191200--Sobic002G066800 Sobic003G299500 Sobic003G299500 Sobic006G191200--Sobic003G299500 Sobic002G386900 Sobic002G386900 Sobic006G191200--Sobic002G386900 Sobic009G120400 Sobic009G120400 Sobic006G191200--Sobic009G120400 Sobic004G097900 Sobic004G097900 Sobic006G191200--Sobic004G097900 Sobic001G123600--Sobic006G191200 Sobic001G229300 Sobic001G229300 Sobic001G123600--Sobic001G229300 Sobic003G360300 Sobic003G360300 Sobic001G123600--Sobic003G360300 Sobic007G034200 Sobic007G034200 Sobic001G123600--Sobic007G034200 Sobic001G123600--Sobic002G386900 Sobic010G269300 Sobic010G269300 Sobic001G123600--Sobic010G269300 Sobic001G123600--Sobic009G120400 Sobic001G123600--Sobic003G299500 Sobic003G010900 Sobic003G010900 Sobic001G123600--Sobic003G010900 Sobic002G296400--Sobic006G191200 Sobic006G245900 Sobic006G245900 Sobic002G296400--Sobic006G245900 Sobic002G363800 Sobic002G363800 Sobic002G296400--Sobic002G363800 Sobic003G113300 Sobic003G113300 Sobic002G296400--Sobic003G113300 Sobic001G308400 Sobic001G308400 Sobic002G296400--Sobic001G308400 Sobic009G008200 Sobic009G008200 Sobic002G296400--Sobic009G008200 Sobic003G256800 Sobic003G256800 Sobic002G296400--Sobic003G256800 Sobic002G296400--Sobic002G066800 Sobic002G296400--Sobic001G123600 Sobic001G051400--Sobic002G066800 Sobic001G051400--Sobic007G034200 Sobic003G393200 Sobic003G393200 Sobic001G051400--Sobic003G393200 Sobic001G051400--Sobic003G010900 Sobic001G051400--Sobic009G120400 Sobic001G051400--Sobic006G191200 Sobic005G087300 Sobic005G087300 Sobic001G051400--Sobic005G087300 Sobic001G051400--Sobic002G078100 Sobic005G123400 Sobic005G123400 Sobic001G051400--Sobic005G123400 Sobic002G078100--Sobic002G066800 Sobic002G426100 Sobic002G426100 Sobic002G078100--Sobic002G426100 Sobic002G078100--Sobic009G120400 Sobic008G047500 Sobic008G047500 Sobic002G078100--Sobic008G047500 Sobic002G078100--Sobic006G191200 Sobic002G078100--Sobic001G051400 Sobic008G111600 Sobic008G111600 Sobic002G078100--Sobic008G111600 Sobic003G194800 Sobic003G194800 Sobic002G078100--Sobic003G194800 Sobic002G078100--Sobic007G034200 Sobic002G066800--Sobic001G051400 Sobic002G066800--Sobic005G087300 Sobic002G066800--Sobic002G078100 Sobic002G066800--Sobic003G393200 Sobic010G038900 Sobic010G038900 Sobic002G066800--Sobic010G038900 Sobic010G018900 Sobic010G018900 Sobic002G066800--Sobic010G018900 Sobic002G066800--Sobic003G010900 Sobic002G066800--Sobic006G191200 Sobic003G023200 Sobic003G023200 Sobic002G066800--Sobic003G023200 Sobic003G299500--Sobic007G034200 Sobic003G299500--Sobic003G194800 Sobic004G106250 Sobic004G106250 Sobic003G299500--Sobic004G106250 Sobic003G299500--Sobic009G120400 Sobic003G016500 Sobic003G016500 Sobic003G299500--Sobic003G016500 Sobic003G299500--Sobic001G123600 Sobic003G299500--Sobic006G245900 Sobic002G235900 Sobic002G235900 Sobic003G299500--Sobic002G235900 Sobic003G299500--Sobic006G191200 Sobic002G386600 Sobic002G386600 Sobic002G386900--Sobic002G386600 Sobic002G386900--Sobic004G097900 Sobic002G386900--Sobic001G123600 Sobic002G386900--Sobic006G191200 Sobic002G386900--Sobic007G034200 Sobic002G386900--Sobic001G051400 Sobic001G200200 Sobic001G200200 Sobic002G386900--Sobic001G200200 Sobic002G239601 Sobic002G239601 Sobic002G386900--Sobic002G239601 Sobic002G292800 Sobic002G292800 Sobic002G386900--Sobic002G292800 Sobic002G173400 Sobic002G173400 Sobic009G120400--Sobic002G173400 Sobic009G120400--Sobic002G426100 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G120400--Sobic004G215600 Sobic007G105700 Sobic007G105700 Sobic009G120400--Sobic007G105700 Sobic009G120400--Sobic003G299500 Sobic007G186400 Sobic007G186400 Sobic009G120400--Sobic007G186400 Sobic009G120400--Sobic001G051400 Sobic004G097900--Sobic002G292800 Sobic004G097900--Sobic002G386900 Sobic004G097900--Sobic006G191200 Sobic001G495400 Sobic001G495400 Sobic004G097900--Sobic001G495400 Sobic006G029100 Sobic006G029100 Sobic004G097900--Sobic006G029100 Sobic002G112600 Sobic002G112600 Sobic004G097900--Sobic002G112600 Sobic003G218200 Sobic003G218200 Sobic004G097900--Sobic003G218200 Sobic006G170900 Sobic006G170900 Sobic004G097900--Sobic006G170900 Sobic004G097900--Sobic004G106250
Octagon: transcription factors


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