Gene annotation
Transcriptome id Sobic.004G031300.1,Sobic.004G031300.2,Sobic.004G031300.3
Synonym Sb04g002710
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5RKN4 , A0A1Z5RKP6 , A0A1Z5RL69
Pfam PF13041 PF13812 PF01535 PF01535 PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF470 PTHR24015:SF470 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G04790 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g03970.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018868
Brachypodium -
Barley HORVU6Hr1G017720.35 , HORVU6Hr1G017720.39 , HORVU6Hr1G017720.15 , HORVU6Hr1G017720.14 , HORVU6Hr1G017720.17 , HORVU6Hr1G017720.16 , HORVU6Hr1G017720.11 , HORVU6Hr1G017720.10 , HORVU6Hr1G017720.13 , HORVU6Hr1G017720.12 , HORVU6Hr1G017720.19 , HORVU6Hr1G017720.18 , HORVU6Hr1G017720.1 , HORVU6Hr1G017720.3 , HORVU6Hr1G017720.2 , HORVU6Hr1G017720.5 , HORVU6Hr1G017720.4 , HORVU6Hr1G017720.7 , HORVU6Hr1G017720.6 , HORVU6Hr1G017720.9 , HORVU6Hr1G017720.8 , HORVU6Hr1G017720.40 , HORVU6Hr1G017720.33 , HORVU6Hr1G017720.32 , HORVU6Hr1G017720.31 , HORVU6Hr1G017720.30 , HORVU6Hr1G017720.37 , HORVU6Hr1G017720.36 , HORVU6Hr1G017720.34 , HORVU6Hr1G017720.38 , HORVU6Hr1G017720.20 , HORVU6Hr1G017720.21 , HORVU6Hr1G017720.22 , HORVU6Hr1G017720.23 , HORVU6Hr1G017720.25 , HORVU6Hr1G017720.26 , HORVU6Hr1G017720.27 , HORVU6Hr1G017720.28 , HORVU6Hr1G017720.29
Wheat TraesCS6B02G124900 , TraesCS6D02G087600 , TraesCS6A02G096500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.006G245900 FAR1 family protein, expressed -
3 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
4 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
5 Sobic.006G125500 expressed protein -
6 Sobic.002G296400 E3 ubiquitin-protein ligase HERC2, putative, expressed -
7 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
8 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
9 Sobic.002G381900 expressed protein -
10 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
11 Sobic.007G016900 OsFBL26 - F-box domain and LRR containing protein, expressed -
12 Sobic.010G003900 arginine N-methyltransferase 7, putative, expressed K11438: type III protein arginine methyltransferase
13 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
14 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
15 Sobic.007G017200 OsFBX142 - F-box domain containing protein, expressed -
16 Sobic.002G112600 zinc finger family protein, putative, expressed -
17 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.004G224600 expressed protein -
19 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
20 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4


Gene co-expression network
sample Sobic004G031300 Sobic004G031300 Sobic001G004100 Sobic001G004100 Sobic004G031300--Sobic001G004100 Sobic006G245900 Sobic006G245900 Sobic004G031300--Sobic006G245900 Sobic006G191200 Sobic006G191200 Sobic004G031300--Sobic006G191200 Sobic005G000300 Sobic005G000300 Sobic004G031300--Sobic005G000300 Sobic006G125500 Sobic006G125500 Sobic004G031300--Sobic006G125500 Sobic002G296400 Sobic002G296400 Sobic004G031300--Sobic002G296400 Sobic006G002800 Sobic006G002800 Sobic004G031300--Sobic006G002800 Sobic003G308500 Sobic003G308500 Sobic004G031300--Sobic003G308500 Sobic002G381900 Sobic002G381900 Sobic004G031300--Sobic002G381900 Sobic001G004100--Sobic004G031300 Sobic007G187600 Sobic007G187600 Sobic001G004100--Sobic007G187600 Sobic001G013300 Sobic001G013300 Sobic001G004100--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G408600 Sobic001G408600 Sobic001G004100--Sobic001G408600 Sobic001G373000 Sobic001G373000 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic002G371600 Sobic002G371600 Sobic006G245900--Sobic002G371600 Sobic006G245900--Sobic002G296400 Sobic006G245900--Sobic004G031300 Sobic007G016900 Sobic007G016900 Sobic006G245900--Sobic007G016900 Sobic002G292800 Sobic002G292800 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic002G252100 Sobic002G252100 Sobic006G245900--Sobic002G252100 Sobic006G245900--Sobic003G308500 Sobic001G346900 Sobic001G346900 Sobic006G245900--Sobic001G346900 Sobic001G123600 Sobic001G123600 Sobic006G191200--Sobic001G123600 Sobic006G191200--Sobic002G296400 Sobic001G051400 Sobic001G051400 Sobic006G191200--Sobic001G051400 Sobic002G078100 Sobic002G078100 Sobic006G191200--Sobic002G078100 Sobic002G066800 Sobic002G066800 Sobic006G191200--Sobic002G066800 Sobic003G299500 Sobic003G299500 Sobic006G191200--Sobic003G299500 Sobic002G386900 Sobic002G386900 Sobic006G191200--Sobic002G386900 Sobic009G120400 Sobic009G120400 Sobic006G191200--Sobic009G120400 Sobic004G097900 Sobic004G097900 Sobic006G191200--Sobic004G097900 Sobic002G112600 Sobic002G112600 Sobic005G000300--Sobic002G112600 Sobic005G000300--Sobic004G031300 Sobic010G091500 Sobic010G091500 Sobic005G000300--Sobic010G091500 Sobic003G123200 Sobic003G123200 Sobic005G000300--Sobic003G123200 Sobic010G224700 Sobic010G224700 Sobic005G000300--Sobic010G224700 Sobic001G334100 Sobic001G334100 Sobic005G000300--Sobic001G334100 Sobic009G246500 Sobic009G246500 Sobic005G000300--Sobic009G246500 Sobic002G378100 Sobic002G378100 Sobic005G000300--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic005G000300--Sobic008G163500 Sobic006G125500--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G125500--Sobic004G224600 Sobic006G125500--Sobic006G002800 Sobic003G146600 Sobic003G146600 Sobic006G125500--Sobic003G146600 Sobic006G125500--Sobic002G371600 Sobic010G080700 Sobic010G080700 Sobic006G125500--Sobic010G080700 Sobic004G332400 Sobic004G332400 Sobic006G125500--Sobic004G332400 Sobic007G155500 Sobic007G155500 Sobic006G125500--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic006G125500--Sobic005G010900 Sobic002G296400--Sobic006G191200 Sobic002G296400--Sobic006G245900 Sobic002G363800 Sobic002G363800 Sobic002G296400--Sobic002G363800 Sobic003G113300 Sobic003G113300 Sobic002G296400--Sobic003G113300 Sobic001G308400 Sobic001G308400 Sobic002G296400--Sobic001G308400 Sobic009G008200 Sobic009G008200 Sobic002G296400--Sobic009G008200 Sobic003G256800 Sobic003G256800 Sobic002G296400--Sobic003G256800 Sobic002G296400--Sobic002G066800 Sobic002G296400--Sobic001G123600 Sobic006G002800--Sobic003G308500 Sobic006G002800--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic006G002800--Sobic002G150700 Sobic001G145400 Sobic001G145400 Sobic006G002800--Sobic001G145400 Sobic006G002800--Sobic003G146600 Sobic010G007100 Sobic010G007100 Sobic006G002800--Sobic010G007100 Sobic004G321700 Sobic004G321700 Sobic006G002800--Sobic004G321700 Sobic009G234700 Sobic009G234700 Sobic006G002800--Sobic009G234700 Sobic008G147200 Sobic008G147200 Sobic006G002800--Sobic008G147200 Sobic003G308500--Sobic003G146600 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic003G308500--Sobic001G145400 Sobic003G308500--Sobic006G245900 Sobic004G084400 Sobic004G084400 Sobic002G381900--Sobic004G084400 Sobic002G381900--Sobic001G308400 Sobic003G010900 Sobic003G010900 Sobic002G381900--Sobic003G010900 Sobic002G381900--Sobic003G256800 Sobic002G381900--Sobic006G191200 Sobic005G114500 Sobic005G114500 Sobic002G381900--Sobic005G114500 Sobic009G254100 Sobic009G254100 Sobic002G381900--Sobic009G254100 Sobic002G381900--Sobic003G299500 Sobic002G381900--Sobic004G031300
Octagon: transcription factors


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