Gene annotation
Transcriptome id Sobic.007G017200.1
Synonym Sb07g001477
Functional annotation OsFBX142 - F-box domain containing protein, expressed
UniProt A0A1B6PEY8
Pfam PF08387
Panther DB PTHR32212 PTHR32212:SF111
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02930 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os04g40370.2 : OsFBX142 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026336 , Zm00025a026334
Brachypodium KQJ92238 , KQJ92239 , KQJ92237
Barley -
Wheat TraesCS6D02G053300 , TraesCS6A02G046000 , TraesCSU02G107500 , TraesCS6D02G053200 , TraesCS5A02G281000 , TraesCS6B02G065100 , TraesCS6B02G062100 , TraesCS6A02G048500 , TraesCS6B02G062200 , TraesCS6B02G062200 , TraesCS6A02G046200
Populus -


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cDNA sequences
Sobic.007G017200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G033900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
2 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
3 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
5 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
6 Sobic.006G245900 FAR1 family protein, expressed -
7 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
8 Sobic.007G016900 OsFBL26 - F-box domain and LRR containing protein, expressed -
9 Sobic.004G020100 division protein, putative, expressed -
10 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
11 Sobic.002G369701 - K06877: DEAD/DEAH box helicase domain-containing protein
12 Sobic.003G360300 exostosin family domain containing protein, expressed -
13 Sobic.003G214700 transcriptional corepressor LEUNIG, putative, expressed -
14 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
15 Sobic.003G010900 expressed protein -
16 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
17 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
18 Sobic.010G215900 type II intron maturase protein, putative, expressed -
19 Sobic.004G278900 regulatory protein, putative, expressed -
20 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -


Gene co-expression network
sample Sobic007G017200 Sobic007G017200 Sobic001G033900 Sobic001G033900 Sobic007G017200--Sobic001G033900 Sobic006G140400 Sobic006G140400 Sobic007G017200--Sobic006G140400 Sobic001G004100 Sobic001G004100 Sobic007G017200--Sobic001G004100 Sobic004G031300 Sobic004G031300 Sobic007G017200--Sobic004G031300 Sobic001G013300 Sobic001G013300 Sobic007G017200--Sobic001G013300 Sobic006G245900 Sobic006G245900 Sobic007G017200--Sobic006G245900 Sobic003G259600 Sobic003G259600 Sobic007G017200--Sobic003G259600 Sobic007G016900 Sobic007G016900 Sobic007G017200--Sobic007G016900 Sobic004G020100 Sobic004G020100 Sobic007G017200--Sobic004G020100 Sobic001G033900--Sobic007G017200 Sobic001G033900--Sobic003G259600 Sobic001G033900--Sobic001G013300 Sobic003G361400 Sobic003G361400 Sobic001G033900--Sobic003G361400 Sobic010G136250 Sobic010G136250 Sobic001G033900--Sobic010G136250 Sobic001G033900--Sobic006G140400 Sobic003G360300 Sobic003G360300 Sobic001G033900--Sobic003G360300 Sobic005G108000 Sobic005G108000 Sobic001G033900--Sobic005G108000 Sobic001G334100 Sobic001G334100 Sobic001G033900--Sobic001G334100 Sobic001G453500 Sobic001G453500 Sobic006G140400--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic010G032300 Sobic010G032300 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic001G004100--Sobic004G031300 Sobic007G187600 Sobic007G187600 Sobic001G004100--Sobic007G187600 Sobic001G004100--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G408600 Sobic001G408600 Sobic001G004100--Sobic001G408600 Sobic001G373000 Sobic001G373000 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic004G031300--Sobic001G004100 Sobic004G031300--Sobic006G245900 Sobic006G191200 Sobic006G191200 Sobic004G031300--Sobic006G191200 Sobic005G000300 Sobic005G000300 Sobic004G031300--Sobic005G000300 Sobic006G125500 Sobic006G125500 Sobic004G031300--Sobic006G125500 Sobic002G296400 Sobic002G296400 Sobic004G031300--Sobic002G296400 Sobic006G002800 Sobic006G002800 Sobic004G031300--Sobic006G002800 Sobic003G308500 Sobic003G308500 Sobic004G031300--Sobic003G308500 Sobic002G381900 Sobic002G381900 Sobic004G031300--Sobic002G381900 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic002G371600 Sobic002G371600 Sobic006G245900--Sobic002G371600 Sobic006G245900--Sobic002G296400 Sobic006G245900--Sobic004G031300 Sobic006G245900--Sobic007G016900 Sobic002G292800 Sobic002G292800 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic002G252100 Sobic002G252100 Sobic006G245900--Sobic002G252100 Sobic006G245900--Sobic003G308500 Sobic006G245900--Sobic001G346900 Sobic003G259600--Sobic003G361400 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic004G038100 Sobic004G038100 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic003G259600--Sobic002G142700 Sobic003G259600--Sobic001G334100 Sobic007G016900--Sobic006G245900 Sobic007G016900--Sobic007G187600 Sobic003G413100 Sobic003G413100 Sobic007G016900--Sobic003G413100 Sobic003G010900 Sobic003G010900 Sobic007G016900--Sobic003G010900 Sobic004G345400 Sobic004G345400 Sobic007G016900--Sobic004G345400 Sobic001G042200 Sobic001G042200 Sobic007G016900--Sobic001G042200 Sobic002G343200 Sobic002G343200 Sobic007G016900--Sobic002G343200 Sobic003G113300 Sobic003G113300 Sobic007G016900--Sobic003G113300 Sobic009G040800 Sobic009G040800 Sobic007G016900--Sobic009G040800 Sobic004G020100--Sobic003G010900 Sobic001G123600 Sobic001G123600 Sobic004G020100--Sobic001G123600 Sobic002G076500 Sobic002G076500 Sobic004G020100--Sobic002G076500 Sobic001G229300 Sobic001G229300 Sobic004G020100--Sobic001G229300 Sobic009G032200 Sobic009G032200 Sobic004G020100--Sobic009G032200 Sobic003G432800 Sobic003G432800 Sobic004G020100--Sobic003G432800 Sobic001G051400 Sobic001G051400 Sobic004G020100--Sobic001G051400 Sobic004G020100--Sobic002G296400 Sobic004G020100--Sobic006G191200
Octagon: transcription factors


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