Gene annotation
Transcriptome id Sobic.001G033900.5,Sobic.001G033900.3,Sobic.001G033900.2,Sobic.001G033900.4
Synonym Sb01g003170
Functional annotation mTERF family protein, expressed
UniProt A0A1Z5S473 , A0A1Z5S4H8 , A0A1Z5S474
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF17
NCBI CDD KOG1267; Mitochondrial transcription termination factor, mTERF
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT5G07900 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os11g14130.1,LOC_Os11g09990.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a008824 , Zm00025a008814
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G017200 OsFBX142 - F-box domain containing protein, expressed -
2 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
3 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
4 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
5 Sobic.010G136250 - -
6 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
7 Sobic.003G360300 exostosin family domain containing protein, expressed -
8 Sobic.005G108000 - -
9 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
10 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
11 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.010G235700 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
13 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
14 Sobic.002G208400 regulator protein, putative, expressed -
15 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
16 Sobic.002G177500 expressed protein -
17 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
18 Sobic.006G262501 - -
19 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
20 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G033900 Sobic001G033900 Sobic007G017200 Sobic007G017200 Sobic001G033900--Sobic007G017200 Sobic003G259600 Sobic003G259600 Sobic001G033900--Sobic003G259600 Sobic001G013300 Sobic001G013300 Sobic001G033900--Sobic001G013300 Sobic003G361400 Sobic003G361400 Sobic001G033900--Sobic003G361400 Sobic010G136250 Sobic010G136250 Sobic001G033900--Sobic010G136250 Sobic006G140400 Sobic006G140400 Sobic001G033900--Sobic006G140400 Sobic003G360300 Sobic003G360300 Sobic001G033900--Sobic003G360300 Sobic005G108000 Sobic005G108000 Sobic001G033900--Sobic005G108000 Sobic001G334100 Sobic001G334100 Sobic001G033900--Sobic001G334100 Sobic007G017200--Sobic001G033900 Sobic007G017200--Sobic006G140400 Sobic001G004100 Sobic001G004100 Sobic007G017200--Sobic001G004100 Sobic004G031300 Sobic004G031300 Sobic007G017200--Sobic004G031300 Sobic007G017200--Sobic001G013300 Sobic006G245900 Sobic006G245900 Sobic007G017200--Sobic006G245900 Sobic007G017200--Sobic003G259600 Sobic007G016900 Sobic007G016900 Sobic007G017200--Sobic007G016900 Sobic004G020100 Sobic004G020100 Sobic007G017200--Sobic004G020100 Sobic003G259600--Sobic003G361400 Sobic003G259600--Sobic003G360300 Sobic001G373000 Sobic001G373000 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic004G038100 Sobic004G038100 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic003G259600--Sobic001G334100 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic003G361400--Sobic003G259600 Sobic003G361400--Sobic001G373000 Sobic002G219900 Sobic002G219900 Sobic003G361400--Sobic002G219900 Sobic003G361400--Sobic004G038100 Sobic003G361400--Sobic001G013300 Sobic002G043000 Sobic002G043000 Sobic003G361400--Sobic002G043000 Sobic003G361400--Sobic001G033900 Sobic002G372500 Sobic002G372500 Sobic003G361400--Sobic002G372500 Sobic003G361400--Sobic003G360300 Sobic010G136250--Sobic001G033900 Sobic010G136250--Sobic003G361400 Sobic010G136250--Sobic007G017200 Sobic010G136250--Sobic003G259600 Sobic001G300900 Sobic001G300900 Sobic010G136250--Sobic001G300900 Sobic010G136250--Sobic002G372500 Sobic001G461300 Sobic001G461300 Sobic010G136250--Sobic001G461300 Sobic003G049600 Sobic003G049600 Sobic010G136250--Sobic003G049600 Sobic010G032300 Sobic010G032300 Sobic010G136250--Sobic010G032300 Sobic001G453500 Sobic001G453500 Sobic006G140400--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic006G140400--Sobic007G017200 Sobic006G140400--Sobic002G043000 Sobic003G360300--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G360300--Sobic001G123600 Sobic003G360300--Sobic010G269300 Sobic007G047600 Sobic007G047600 Sobic003G360300--Sobic007G047600 Sobic006G179300 Sobic006G179300 Sobic003G360300--Sobic006G179300 Sobic003G360300--Sobic002G142700 Sobic004G342300 Sobic004G342300 Sobic003G360300--Sobic004G342300 Sobic004G277400 Sobic004G277400 Sobic003G360300--Sobic004G277400 Sobic008G080500 Sobic008G080500 Sobic003G360300--Sobic008G080500 Sobic005G108000--Sobic001G346900 Sobic002G127200 Sobic002G127200 Sobic005G108000--Sobic002G127200 Sobic004G224600 Sobic004G224600 Sobic005G108000--Sobic004G224600 Sobic006G178100 Sobic006G178100 Sobic005G108000--Sobic006G178100 Sobic002G171300 Sobic002G171300 Sobic005G108000--Sobic002G171300 Sobic009G211200 Sobic009G211200 Sobic005G108000--Sobic009G211200 Sobic010G080550 Sobic010G080550 Sobic005G108000--Sobic010G080550 Sobic006G002800 Sobic006G002800 Sobic005G108000--Sobic006G002800 Sobic005G108000--Sobic006G245900 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300
Octagon: transcription factors


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