Gene annotation
Transcriptome id Sobic.002G208400.3,Sobic.002G208400.2
Synonym Sb02g025260
Functional annotation regulator protein, putative, expressed
UniProt A0A1W0W5A6
Pfam PF01980
Panther DB PTHR12818 PTHR12818:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28020 : -
RAP-DB (Rice) LOC_Os09g25950.1 : regulator protein, putative, expressed
MaizeGDB (Corn) Zm00025a047082
Brachypodium KQJ90318
Barley HORVU0Hr1G013040.18 , HORVU0Hr1G013040.19 , HORVU0Hr1G013040.14 , HORVU0Hr1G013040.15 , HORVU0Hr1G013040.16 , HORVU0Hr1G013040.17 , HORVU0Hr1G013040.10 , HORVU0Hr1G013040.11 , HORVU0Hr1G013040.12 , HORVU0Hr1G013040.13 , HORVU0Hr1G013040.6 , HORVU0Hr1G013040.7 , HORVU0Hr1G013040.4 , HORVU0Hr1G013040.5 , HORVU0Hr1G013040.2 , HORVU0Hr1G013040.3 , HORVU0Hr1G013040.1 , HORVU0Hr1G013040.8 , HORVU0Hr1G013040.9 , HORVU0Hr1G013040.20
Wheat TraesCS5A02G219900 , TraesCS5B02G218800 , TraesCS5D02G227900 , TraesCS5D02G227900 , TraesCS5B02G219000 , TraesCS5A02G219900
Populus -


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cDNA sequences
Sobic.002G208400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
2 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
3 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
4 Sobic.006G032600 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
5 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
6 Sobic.004G030400 expressed protein -
7 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
8 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
9 Sobic.003G129300 uridine kinase, putative, expressed -
10 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
11 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
12 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
13 Sobic.001G465500 radical SAM enzyme, putative, expressed -
14 Sobic.010G141600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K00122: formate dehydrogenase
15 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
16 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
17 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
18 Sobic.002G264300 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
19 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
20 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial


Gene co-expression network
sample Sobic002G208400 Sobic002G208400 Sobic002G142700 Sobic002G142700 Sobic002G208400--Sobic002G142700 Sobic001G115500 Sobic001G115500 Sobic002G208400--Sobic001G115500 Sobic009G113100 Sobic009G113100 Sobic002G208400--Sobic009G113100 Sobic006G032600 Sobic006G032600 Sobic002G208400--Sobic006G032600 Sobic003G008600 Sobic003G008600 Sobic002G208400--Sobic003G008600 Sobic004G030400 Sobic004G030400 Sobic002G208400--Sobic004G030400 Sobic003G259600 Sobic003G259600 Sobic002G208400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic002G208400--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic002G208400--Sobic003G129300 Sobic002G399900 Sobic002G399900 Sobic002G142700--Sobic002G399900 Sobic007G051400 Sobic007G051400 Sobic002G142700--Sobic007G051400 Sobic002G142700--Sobic002G208400 Sobic004G256300 Sobic004G256300 Sobic002G142700--Sobic004G256300 Sobic003G221500 Sobic003G221500 Sobic002G142700--Sobic003G221500 Sobic003G222700 Sobic003G222700 Sobic002G142700--Sobic003G222700 Sobic001G229300 Sobic001G229300 Sobic002G142700--Sobic001G229300 Sobic001G373000 Sobic001G373000 Sobic002G142700--Sobic001G373000 Sobic003G360300 Sobic003G360300 Sobic002G142700--Sobic003G360300 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G115500--Sobic001G373000 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic009G113100--Sobic002G208400 Sobic007G187600 Sobic007G187600 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic006G061100 Sobic006G061100 Sobic009G113100--Sobic006G061100 Sobic006G032600--Sobic002G208400 Sobic006G032600--Sobic004G030400 Sobic003G274400 Sobic003G274400 Sobic006G032600--Sobic003G274400 Sobic006G032600--Sobic001G115500 Sobic006G032600--Sobic004G256300 Sobic006G032600--Sobic002G264300 Sobic001G465500 Sobic001G465500 Sobic006G032600--Sobic001G465500 Sobic001G506000 Sobic001G506000 Sobic006G032600--Sobic001G506000 Sobic006G032600--Sobic007G051400 Sobic003G008600--Sobic001G008500 Sobic003G008600--Sobic001G115500 Sobic002G423500 Sobic002G423500 Sobic003G008600--Sobic002G423500 Sobic002G365900 Sobic002G365900 Sobic003G008600--Sobic002G365900 Sobic003G008600--Sobic002G208400 Sobic004G215700 Sobic004G215700 Sobic003G008600--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic003G008600--Sobic001G460500 Sobic004G075200 Sobic004G075200 Sobic003G008600--Sobic004G075200 Sobic003G130000 Sobic003G130000 Sobic003G008600--Sobic003G130000 Sobic002G160700 Sobic002G160700 Sobic004G030400--Sobic002G160700 Sobic004G356200 Sobic004G356200 Sobic004G030400--Sobic004G356200 Sobic001G200200 Sobic001G200200 Sobic004G030400--Sobic001G200200 Sobic002G199400 Sobic002G199400 Sobic004G030400--Sobic002G199400 Sobic004G030400--Sobic001G123600 Sobic004G030400--Sobic002G142700 Sobic004G030400--Sobic002G208400 Sobic003G388000 Sobic003G388000 Sobic004G030400--Sobic003G388000 Sobic002G386600 Sobic002G386600 Sobic004G030400--Sobic002G386600 Sobic003G361400 Sobic003G361400 Sobic003G259600--Sobic003G361400 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic004G038100 Sobic004G038100 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic006G191200 Sobic006G191200 Sobic001G123600--Sobic006G191200 Sobic001G123600--Sobic001G229300 Sobic001G123600--Sobic003G360300 Sobic007G034200 Sobic007G034200 Sobic001G123600--Sobic007G034200 Sobic002G386900 Sobic002G386900 Sobic001G123600--Sobic002G386900 Sobic001G123600--Sobic010G269300 Sobic009G120400 Sobic009G120400 Sobic001G123600--Sobic009G120400 Sobic003G299500 Sobic003G299500 Sobic001G123600--Sobic003G299500 Sobic003G010900 Sobic003G010900 Sobic001G123600--Sobic003G010900 Sobic003G129300--Sobic001G229300 Sobic003G129300--Sobic001G123600 Sobic003G129300--Sobic002G142700 Sobic010G065600 Sobic010G065600 Sobic003G129300--Sobic010G065600 Sobic003G129300--Sobic002G208400 Sobic009G063800 Sobic009G063800 Sobic003G129300--Sobic009G063800 Sobic003G119900 Sobic003G119900 Sobic003G129300--Sobic003G119900 Sobic001G191900 Sobic001G191900 Sobic003G129300--Sobic001G191900 Sobic003G129300--Sobic001G465500
Octagon: transcription factors


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