Gene annotation
Transcriptome id Sobic.002G264300.1
Synonym 3BETAHSD/D2, AT3BETAHSD/D2, Sb02g029890
Functional annotation sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
UniProt C5X5E7
Pfam PF01370 PF02453
Panther DB PTHR10366 PTHR10366:SF372
NCBI CDD KOG1430; C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases
KEGG Orthology K07748; NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT2G26260 : 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
RAP-DB (Rice) LOC_Os09g34090.1 : sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
MaizeGDB (Corn) Zm00025a014348
Brachypodium PNT64970
Barley -
Wheat TraesCS5D02G308800 , TraesCS5B02G302300 , TraesCS5B02G302300 , TraesCS5B02G302300 , TraesCS5A02G302300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G264300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
2 Sobic.010G073500 3-oxoacyl-synthase, putative, expressed K09458: fabF, OXSM, 3-oxoacyl-[acyl-carrier-protein] synthase II
3 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
4 Sobic.009G151800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
5 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
6 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
7 Sobic.004G030400 expressed protein -
8 Sobic.006G071628 - -
9 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
10 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
11 Sobic.002G208400 regulator protein, putative, expressed -
12 Sobic.006G029400 GDSL-like lipase/acylhydrolase, putative, expressed -
13 Sobic.006G032600 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
14 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
15 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
16 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
17 Sobic.001G465500 radical SAM enzyme, putative, expressed -
18 Sobic.002G155100 bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed K12524: bifunctional aspartokinase / homoserine dehydrogenase 1
19 Sobic.002G043000 HEN1, putative, expressed -
20 Sobic.008G059900 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)


Gene co-expression network
sample Sobic002G264300 Sobic002G264300 Sobic001G115500 Sobic001G115500 Sobic002G264300--Sobic001G115500 Sobic010G073500 Sobic010G073500 Sobic002G264300--Sobic010G073500 Sobic002G126800 Sobic002G126800 Sobic002G264300--Sobic002G126800 Sobic009G151800 Sobic009G151800 Sobic002G264300--Sobic009G151800 Sobic001G373000 Sobic001G373000 Sobic002G264300--Sobic001G373000 Sobic001G008500 Sobic001G008500 Sobic002G264300--Sobic001G008500 Sobic004G030400 Sobic004G030400 Sobic002G264300--Sobic004G030400 Sobic006G071628 Sobic006G071628 Sobic002G264300--Sobic006G071628 Sobic004G075200 Sobic004G075200 Sobic002G264300--Sobic004G075200 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic002G208400 Sobic002G208400 Sobic001G115500--Sobic002G208400 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G115500--Sobic001G373000 Sobic008G059900 Sobic008G059900 Sobic010G073500--Sobic008G059900 Sobic010G073500--Sobic002G264300 Sobic006G237000 Sobic006G237000 Sobic010G073500--Sobic006G237000 Sobic009G195700 Sobic009G195700 Sobic010G073500--Sobic009G195700 Sobic005G031000 Sobic005G031000 Sobic010G073500--Sobic005G031000 Sobic006G029400 Sobic006G029400 Sobic010G073500--Sobic006G029400 Sobic002G125800 Sobic002G125800 Sobic010G073500--Sobic002G125800 Sobic001G200200 Sobic001G200200 Sobic010G073500--Sobic001G200200 Sobic001G199500 Sobic001G199500 Sobic010G073500--Sobic001G199500 Sobic003G432300 Sobic003G432300 Sobic002G126800--Sobic003G432300 Sobic005G028100 Sobic005G028100 Sobic002G126800--Sobic005G028100 Sobic002G126800--Sobic001G373000 Sobic009G104900 Sobic009G104900 Sobic002G126800--Sobic009G104900 Sobic002G132600 Sobic002G132600 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic006G033101 Sobic006G033101 Sobic002G126800--Sobic006G033101 Sobic007G069700 Sobic007G069700 Sobic002G126800--Sobic007G069700 Sobic005G088900 Sobic005G088900 Sobic002G126800--Sobic005G088900 Sobic009G081500 Sobic009G081500 Sobic009G151800--Sobic009G081500 Sobic001G460500 Sobic001G460500 Sobic009G151800--Sobic001G460500 Sobic009G151800--Sobic002G264300 Sobic003G259600 Sobic003G259600 Sobic009G151800--Sobic003G259600 Sobic009G151800--Sobic004G075200 Sobic002G356600 Sobic002G356600 Sobic009G151800--Sobic002G356600 Sobic004G356200 Sobic004G356200 Sobic009G151800--Sobic004G356200 Sobic009G151800--Sobic005G031000 Sobic006G157000 Sobic006G157000 Sobic009G151800--Sobic006G157000 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic001G373000--Sobic005G028100 Sobic004G047200 Sobic004G047200 Sobic001G008500--Sobic004G047200 Sobic006G251600 Sobic006G251600 Sobic001G008500--Sobic006G251600 Sobic001G008500--Sobic003G008600 Sobic001G008500--Sobic001G115500 Sobic009G071700 Sobic009G071700 Sobic001G008500--Sobic009G071700 Sobic001G008500--Sobic010G188000 Sobic001G008500--Sobic001G436300 Sobic002G423500 Sobic002G423500 Sobic001G008500--Sobic002G423500 Sobic001G371100 Sobic001G371100 Sobic001G008500--Sobic001G371100 Sobic002G160700 Sobic002G160700 Sobic004G030400--Sobic002G160700 Sobic004G030400--Sobic004G356200 Sobic004G030400--Sobic001G200200 Sobic002G199400 Sobic002G199400 Sobic004G030400--Sobic002G199400 Sobic001G123600 Sobic001G123600 Sobic004G030400--Sobic001G123600 Sobic002G142700 Sobic002G142700 Sobic004G030400--Sobic002G142700 Sobic004G030400--Sobic002G208400 Sobic003G388000 Sobic003G388000 Sobic004G030400--Sobic003G388000 Sobic002G386600 Sobic002G386600 Sobic004G030400--Sobic002G386600 Sobic009G052100 Sobic009G052100 Sobic006G071628--Sobic009G052100 Sobic001G051300 Sobic001G051300 Sobic006G071628--Sobic001G051300 Sobic006G084300 Sobic006G084300 Sobic006G071628--Sobic006G084300 Sobic007G173000 Sobic007G173000 Sobic006G071628--Sobic007G173000 Sobic010G250800 Sobic010G250800 Sobic006G071628--Sobic010G250800 Sobic006G071628--Sobic001G199500 Sobic004G156200 Sobic004G156200 Sobic006G071628--Sobic004G156200 Sobic001G507200 Sobic001G507200 Sobic006G071628--Sobic001G507200 Sobic001G296800 Sobic001G296800 Sobic006G071628--Sobic001G296800 Sobic009G207200 Sobic009G207200 Sobic004G075200--Sobic009G207200 Sobic001G469200 Sobic001G469200 Sobic004G075200--Sobic001G469200 Sobic004G075200--Sobic008G125000 Sobic001G467100 Sobic001G467100 Sobic004G075200--Sobic001G467100 Sobic007G047600 Sobic007G047600 Sobic004G075200--Sobic007G047600 Sobic004G075200--Sobic006G029400 Sobic004G256300 Sobic004G256300 Sobic004G075200--Sobic004G256300 Sobic004G075200--Sobic003G008600 Sobic006G245700 Sobic006G245700 Sobic004G075200--Sobic006G245700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.