Gene annotation
Transcriptome id Sobic.009G151800.1
Synonym Sb09g021560, PTB3
Functional annotation polypyrimidine tract-binding protein, putative, expressed
UniProt C5YYP8
Pfam PF14259 PF13893
Panther DB PTHR24012 PTHR24012:SF376
NCBI CDD KOG1190; Polypyrimidine tract-binding protein
KEGG Orthology K14948; PTBP2, polypyrimidine tract-binding protein 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G43190 : polypyrimidine tract-binding protein 3
RAP-DB (Rice) LOC_Os05g36120.1 : polypyrimidine tract-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a037295 , Zm00025a043846
Brachypodium KQK06059 , KQK10778 , KQK10777
Barley HORVU1Hr1G075000.11 , HORVU1Hr1G075000.7 , HORVU1Hr1G075000.6 , HORVU1Hr1G075000.5 , HORVU1Hr1G075000.4 , HORVU1Hr1G075000.3 , HORVU1Hr1G075000.2 , HORVU1Hr1G075000.1 , HORVU1Hr1G075000.9 , HORVU1Hr1G075000.8 , HORVU1Hr1G075000.26 , HORVU1Hr1G075000.25 , HORVU1Hr1G075000.23 , HORVU3Hr1G083090.13 , HORVU3Hr1G083090.12 , HORVU3Hr1G083090.11 , HORVU3Hr1G083090.10 , HORVU3Hr1G083090.17 , HORVU3Hr1G083090.15 , HORVU3Hr1G083090.14 , HORVU3Hr1G083090.19 , HORVU3Hr1G083090.18 , HORVU1Hr1G075000.24 , HORVU1Hr1G075000.22 , HORVU1Hr1G075000.20 , HORVU1Hr1G075000.21 , HORVU3Hr1G083090.3 , HORVU3Hr1G083090.2 , HORVU3Hr1G083090.1 , HORVU3Hr1G083090.7 , HORVU3Hr1G083090.6 , HORVU3Hr1G083090.5 , HORVU3Hr1G083090.4 , HORVU3Hr1G083090.9 , HORVU3Hr1G083090.8 , HORVU1Hr1G075000.19 , HORVU1Hr1G075000.18 , HORVU1Hr1G075000.17 , HORVU1Hr1G075000.16 , HORVU1Hr1G075000.15 , HORVU1Hr1G075000.14 , HORVU1Hr1G075000.13 , HORVU1Hr1G075000.12 , HORVU1Hr1G075000.10 , HORVU3Hr1G083090.22 , HORVU3Hr1G083090.23 , HORVU3Hr1G083090.20 , HORVU3Hr1G083090.21 , HORVU3Hr1G083090.24 , HORVU3Hr1G083090.25
Wheat TraesCS3A02G379700 , TraesCS1B02G282500 , TraesCS3D02G372700 , TraesCS3B02G412300 , TraesCS1A02G272500 , TraesCS1D02G272300
Populus -


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cDNA sequences
Sobic.009G151800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G081500 per1-like family protein, putative, expressed -
2 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
3 Sobic.002G264300 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
4 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
5 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
6 Sobic.002G356600 ZCW7, putative, expressed -
7 Sobic.004G356200 expressed protein -
8 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
9 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
10 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
11 Sobic.007G047600 expressed protein -
12 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
13 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
14 Sobic.003G360300 exostosin family domain containing protein, expressed -
15 Sobic.004G140300 delta14-sterol reductase, putative, expressed K00213: 7-dehydrocholesterol reductase
16 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
17 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
18 Sobic.002G254500 oxidoreductase, putative, expressed K18160: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2
19 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
20 Sobic.004G057100 tubulin-specific chaperone E, putative, expressed -


Gene co-expression network
sample Sobic009G151800 Sobic009G151800 Sobic009G081500 Sobic009G081500 Sobic009G151800--Sobic009G081500 Sobic001G460500 Sobic001G460500 Sobic009G151800--Sobic001G460500 Sobic002G264300 Sobic002G264300 Sobic009G151800--Sobic002G264300 Sobic003G259600 Sobic003G259600 Sobic009G151800--Sobic003G259600 Sobic004G075200 Sobic004G075200 Sobic009G151800--Sobic004G075200 Sobic002G356600 Sobic002G356600 Sobic009G151800--Sobic002G356600 Sobic004G356200 Sobic004G356200 Sobic009G151800--Sobic004G356200 Sobic005G031000 Sobic005G031000 Sobic009G151800--Sobic005G031000 Sobic006G157000 Sobic006G157000 Sobic009G151800--Sobic006G157000 Sobic008G083400 Sobic008G083400 Sobic009G081500--Sobic008G083400 Sobic006G281500 Sobic006G281500 Sobic009G081500--Sobic006G281500 Sobic009G081500--Sobic009G151800 Sobic009G081500--Sobic001G460500 Sobic006G251600 Sobic006G251600 Sobic009G081500--Sobic006G251600 Sobic007G188600 Sobic007G188600 Sobic009G081500--Sobic007G188600 Sobic002G423500 Sobic002G423500 Sobic009G081500--Sobic002G423500 Sobic001G004200 Sobic001G004200 Sobic009G081500--Sobic001G004200 Sobic006G208400 Sobic006G208400 Sobic009G081500--Sobic006G208400 Sobic005G163700 Sobic005G163700 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic001G460500--Sobic002G014400 Sobic004G208500 Sobic004G208500 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic004G047200 Sobic004G047200 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic001G115500 Sobic001G115500 Sobic002G264300--Sobic001G115500 Sobic010G073500 Sobic010G073500 Sobic002G264300--Sobic010G073500 Sobic002G126800 Sobic002G126800 Sobic002G264300--Sobic002G126800 Sobic002G264300--Sobic009G151800 Sobic001G373000 Sobic001G373000 Sobic002G264300--Sobic001G373000 Sobic001G008500 Sobic001G008500 Sobic002G264300--Sobic001G008500 Sobic004G030400 Sobic004G030400 Sobic002G264300--Sobic004G030400 Sobic006G071628 Sobic006G071628 Sobic002G264300--Sobic006G071628 Sobic002G264300--Sobic004G075200 Sobic003G361400 Sobic003G361400 Sobic003G259600--Sobic003G361400 Sobic003G360300 Sobic003G360300 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic004G038100 Sobic004G038100 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic009G207200 Sobic009G207200 Sobic004G075200--Sobic009G207200 Sobic001G469200 Sobic001G469200 Sobic004G075200--Sobic001G469200 Sobic008G125000 Sobic008G125000 Sobic004G075200--Sobic008G125000 Sobic001G467100 Sobic001G467100 Sobic004G075200--Sobic001G467100 Sobic007G047600 Sobic007G047600 Sobic004G075200--Sobic007G047600 Sobic006G029400 Sobic006G029400 Sobic004G075200--Sobic006G029400 Sobic004G256300 Sobic004G256300 Sobic004G075200--Sobic004G256300 Sobic003G008600 Sobic003G008600 Sobic004G075200--Sobic003G008600 Sobic006G245700 Sobic006G245700 Sobic004G075200--Sobic006G245700 Sobic007G134100 Sobic007G134100 Sobic002G356600--Sobic007G134100 Sobic004G354000 Sobic004G354000 Sobic002G356600--Sobic004G354000 Sobic003G209400 Sobic003G209400 Sobic002G356600--Sobic003G209400 Sobic006G271700 Sobic006G271700 Sobic002G356600--Sobic006G271700 Sobic002G309200 Sobic002G309200 Sobic002G356600--Sobic002G309200 Sobic004G034700 Sobic004G034700 Sobic002G356600--Sobic004G034700 Sobic002G356600--Sobic002G412700 Sobic008G017100 Sobic008G017100 Sobic002G356600--Sobic008G017100 Sobic002G356600--Sobic009G151800 Sobic001G200200 Sobic001G200200 Sobic004G356200--Sobic001G200200 Sobic002G371600 Sobic002G371600 Sobic004G356200--Sobic002G371600 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic002G160700 Sobic002G160700 Sobic004G356200--Sobic002G160700 Sobic004G356200--Sobic007G047600 Sobic004G356200--Sobic004G030400 Sobic001G085800 Sobic001G085800 Sobic004G356200--Sobic001G085800 Sobic005G031000--Sobic004G356200 Sobic005G031000--Sobic001G200200 Sobic008G059900 Sobic008G059900 Sobic005G031000--Sobic008G059900 Sobic002G125800 Sobic002G125800 Sobic005G031000--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic005G031000--Sobic001G434700 Sobic006G237000 Sobic006G237000 Sobic005G031000--Sobic006G237000 Sobic001G533100 Sobic001G533100 Sobic005G031000--Sobic001G533100 Sobic004G037200 Sobic004G037200 Sobic005G031000--Sobic004G037200 Sobic010G155600 Sobic010G155600 Sobic005G031000--Sobic010G155600 Sobic003G309300 Sobic003G309300 Sobic006G157000--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic010G216300 Sobic010G216300 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G010400 Sobic006G010400 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic007G114000 Sobic007G114000 Sobic006G157000--Sobic007G114000
Octagon: transcription factors


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