Gene annotation
Transcriptome id Sobic.006G010400.1
Synonym Sb06g001050
Functional annotation tRNA-dihydrouridine synthase 3-like, putative, expressed
UniProt A0A097PPG1 , C5YBR5
Pfam PF01207
Panther DB PTHR11082 PTHR11082:SF8
NCBI CDD -
KEGG Orthology K05544; tRNA-dihydrouridine synthase 3
Gene Ontology GO:0017150; tRNA dihydrouridine synthase activity GO:0008033tRNA processing


Orthologs (automatic annotation)
TAIR AT4G38890 : FMN-linked oxidoreductases superfamily protein
RAP-DB (Rice) LOC_Os04g02730.1 : tRNA-dihydrouridine synthase 3-like, putative, expressed
MaizeGDB (Corn) Zm00025a055679
Brachypodium KQJ81599 , KQJ81600
Barley HORVU2Hr1G001360.2 , HORVU2Hr1G001360.3 , HORVU2Hr1G001360.1 , HORVU2Hr1G001360.4 , HORVU2Hr1G001360.5
Wheat TraesCS2D02G009600 , TraesCS2B02G012900 , TraesCS2A02G007800 , TraesCS2A02G007800
Populus -


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cDNA sequences
Sobic.006G010400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
2 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
3 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
4 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
5 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
6 Sobic.007G140400 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
7 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
8 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
9 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
10 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
11 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
12 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
13 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
14 Sobic.003G165101 - K12876: RBM8A, RNA-binding protein 8A
15 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
16 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.004G124100 EMB1303, putative, expressed -
18 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
19 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
20 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase


Gene co-expression network
sample Sobic006G010400 Sobic006G010400 Sobic001G251600 Sobic001G251600 Sobic006G010400--Sobic001G251600 Sobic006G084000 Sobic006G084000 Sobic006G010400--Sobic006G084000 Sobic007G071900 Sobic007G071900 Sobic006G010400--Sobic007G071900 Sobic001G537500 Sobic001G537500 Sobic006G010400--Sobic001G537500 Sobic009G249800 Sobic009G249800 Sobic006G010400--Sobic009G249800 Sobic007G140400 Sobic007G140400 Sobic006G010400--Sobic007G140400 Sobic008G051200 Sobic008G051200 Sobic006G010400--Sobic008G051200 Sobic004G257100 Sobic004G257100 Sobic006G010400--Sobic004G257100 Sobic001G460500 Sobic001G460500 Sobic006G010400--Sobic001G460500 Sobic001G251600--Sobic006G010400 Sobic002G423500 Sobic002G423500 Sobic001G251600--Sobic002G423500 SobicK004100 SobicK004100 Sobic001G251600--SobicK004100 Sobic004G208500 Sobic004G208500 Sobic001G251600--Sobic004G208500 Sobic001G145400 Sobic001G145400 Sobic001G251600--Sobic001G145400 Sobic001G251600--Sobic009G249800 Sobic002G408900 Sobic002G408900 Sobic001G251600--Sobic002G408900 Sobic002G394600 Sobic002G394600 Sobic001G251600--Sobic002G394600 Sobic002G412700 Sobic002G412700 Sobic001G251600--Sobic002G412700 Sobic006G269900 Sobic006G269900 Sobic006G084000--Sobic006G269900 Sobic008G160000 Sobic008G160000 Sobic006G084000--Sobic008G160000 Sobic006G084000--Sobic006G010400 Sobic003G407600 Sobic003G407600 Sobic006G084000--Sobic003G407600 Sobic004G224600 Sobic004G224600 Sobic006G084000--Sobic004G224600 Sobic001G259000 Sobic001G259000 Sobic006G084000--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic006G084000--Sobic003G382500 Sobic010G247400 Sobic010G247400 Sobic006G084000--Sobic010G247400 Sobic009G246500 Sobic009G246500 Sobic006G084000--Sobic009G246500 Sobic002G231500 Sobic002G231500 Sobic007G071900--Sobic002G231500 Sobic009G075800 Sobic009G075800 Sobic007G071900--Sobic009G075800 Sobic001G434200 Sobic001G434200 Sobic007G071900--Sobic001G434200 Sobic001G455800 Sobic001G455800 Sobic007G071900--Sobic001G455800 Sobic002G020700 Sobic002G020700 Sobic007G071900--Sobic002G020700 Sobic007G071900--Sobic004G257100 Sobic001G333100 Sobic001G333100 Sobic007G071900--Sobic001G333100 Sobic003G221400 Sobic003G221400 Sobic007G071900--Sobic003G221400 Sobic003G375200 Sobic003G375200 Sobic007G071900--Sobic003G375200 Sobic006G073200 Sobic006G073200 Sobic001G537500--Sobic006G073200 Sobic004G167200 Sobic004G167200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic004G275600 Sobic004G275600 Sobic001G537500--Sobic004G275600 Sobic001G537500--Sobic004G257100 Sobic007G145400 Sobic007G145400 Sobic001G537500--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G537500--Sobic005G115500 Sobic001G178300 Sobic001G178300 Sobic001G537500--Sobic001G178300 Sobic002G246700 Sobic002G246700 Sobic001G537500--Sobic002G246700 Sobic009G249800--Sobic002G408900 Sobic009G249800--Sobic004G208500 Sobic009G249800--Sobic001G251600 Sobic009G249800--Sobic002G246700 Sobic002G295900 Sobic002G295900 Sobic009G249800--Sobic002G295900 Sobic009G249800--Sobic006G010400 Sobic001G015400 Sobic001G015400 Sobic009G249800--Sobic001G015400 Sobic009G249800--Sobic001G460500 Sobic004G256000 Sobic004G256000 Sobic009G249800--Sobic004G256000 Sobic007G140400--Sobic006G010400 Sobic007G140400--Sobic008G051200 Sobic001G401500 Sobic001G401500 Sobic007G140400--Sobic001G401500 Sobic001G407700 Sobic001G407700 Sobic007G140400--Sobic001G407700 Sobic003G146600 Sobic003G146600 Sobic007G140400--Sobic003G146600 Sobic002G359400 Sobic002G359400 Sobic007G140400--Sobic002G359400 Sobic004G017400 Sobic004G017400 Sobic007G140400--Sobic004G017400 Sobic006G086600 Sobic006G086600 Sobic007G140400--Sobic006G086600 Sobic001G244300 Sobic001G244300 Sobic007G140400--Sobic001G244300 Sobic004G171200 Sobic004G171200 Sobic008G051200--Sobic004G171200 Sobic001G251100 Sobic001G251100 Sobic008G051200--Sobic001G251100 Sobic006G125900 Sobic006G125900 Sobic008G051200--Sobic006G125900 Sobic004G185800 Sobic004G185800 Sobic008G051200--Sobic004G185800 Sobic001G493200 Sobic001G493200 Sobic008G051200--Sobic001G493200 Sobic001G089600 Sobic001G089600 Sobic008G051200--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic008G051200--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic008G051200--Sobic001G393900 Sobic004G030800 Sobic004G030800 Sobic008G051200--Sobic004G030800 Sobic004G131300 Sobic004G131300 Sobic004G257100--Sobic004G131300 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic004G257100--Sobic006G073200 Sobic005G172500 Sobic005G172500 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic001G227400 Sobic001G227400 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic001G392300 Sobic001G392300 Sobic004G257100--Sobic001G392300 Sobic005G163700 Sobic005G163700 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic001G460500--Sobic002G014400 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic004G047200 Sobic004G047200 Sobic001G460500--Sobic004G047200 Sobic001G460500--Sobic002G412700 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300
Octagon: transcription factors


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