Gene annotation
Transcriptome id Sobic.002G412700.2,Sobic.002G412700.1
Synonym PRMT4B, Sb02g042540, ATPRMT4B
Functional annotation histone-arginine methyltransferase CARM1, putative, expressed
UniProt C5X4W2
Pfam PF05185
Panther DB PTHR11006 PTHR11006:SF10
NCBI CDD -
KEGG Orthology K05931; CARM1, type I protein arginine methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0006479protein methylation


Orthologs (automatic annotation)
TAIR AT3G06930 : protein arginine methyltransferase 4B
RAP-DB (Rice) LOC_Os07g47500.1 : histone-arginine methyltransferase CARM1, putative, expressed
MaizeGDB (Corn) Zm00025a015406 , Zm00025a049123 , Zm00025a049124
Brachypodium KQK14705 , KQK14704
Barley HORVU2Hr1G019780.5 , HORVU2Hr1G019780.6 , HORVU2Hr1G019780.4 , HORVU2Hr1G019780.7 , HORVU2Hr1G019780.1 , HORVU2Hr1G019780.3 , HORVU2Hr1G019780.2 , HORVU2Hr1G019780.9 , HORVU2Hr1G019780.8
Wheat TraesCS2B02G133300 , TraesCS2B02G133300 , TraesCS2B02G133300 , TraesCS2B02G133300 , TraesCS2A02G114100 , TraesCS2A02G114100 , TraesCS2D02G114900 , TraesCS2D02G114900 , TraesCS2D02G114900
Populus -


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cDNA sequences
Sobic.002G412700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
2 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
3 Sobic.003G314700 expressed protein -
4 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
5 Sobic.003G209400 expressed protein -
6 Sobic.007G047600 expressed protein -
7 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
8 Sobic.002G119600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
9 Sobic.010G139500 phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
10 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
11 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
12 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
13 Sobic.001G276200 ACI13, putative, expressed -
14 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
15 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
16 Sobic.007G145400 expressed protein -
17 Sobic.002G137601 - -
18 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
19 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
20 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma


Gene co-expression network
sample Sobic002G412700 Sobic002G412700 Sobic001G248100 Sobic001G248100 Sobic002G412700--Sobic001G248100 Sobic003G405500 Sobic003G405500 Sobic002G412700--Sobic003G405500 Sobic003G314700 Sobic003G314700 Sobic002G412700--Sobic003G314700 Sobic004G034700 Sobic004G034700 Sobic002G412700--Sobic004G034700 Sobic003G209400 Sobic003G209400 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic010G085200 Sobic010G085200 Sobic002G412700--Sobic010G085200 Sobic002G119600 Sobic002G119600 Sobic002G412700--Sobic002G119600 Sobic010G139500 Sobic010G139500 Sobic002G412700--Sobic010G139500 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G248100--Sobic005G115500 Sobic010G262100 Sobic010G262100 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic002G160700 Sobic002G160700 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic001G248100--Sobic003G405500 Sobic001G145400 Sobic001G145400 Sobic003G405500--Sobic001G145400 Sobic008G124800 Sobic008G124800 Sobic003G405500--Sobic008G124800 Sobic002G430300 Sobic002G430300 Sobic003G405500--Sobic002G430300 Sobic009G084900 Sobic009G084900 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic004G141800 Sobic004G141800 Sobic003G405500--Sobic004G141800 Sobic006G077200 Sobic006G077200 Sobic003G405500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic003G405500--Sobic010G059500 Sobic003G405500--Sobic003G314700 Sobic003G029600 Sobic003G029600 Sobic003G314700--Sobic003G029600 Sobic003G314700--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G314700--Sobic003G405500 Sobic007G019300 Sobic007G019300 Sobic003G314700--Sobic007G019300 Sobic004G204100 Sobic004G204100 Sobic003G314700--Sobic004G204100 Sobic001G426600 Sobic001G426600 Sobic003G314700--Sobic001G426600 Sobic003G314700--Sobic002G412700 Sobic001G451300 Sobic001G451300 Sobic004G034700--Sobic001G451300 Sobic004G034700--Sobic002G412700 Sobic001G536000 Sobic001G536000 Sobic004G034700--Sobic001G536000 Sobic010G053600 Sobic010G053600 Sobic004G034700--Sobic010G053600 Sobic004G256500 Sobic004G256500 Sobic004G034700--Sobic004G256500 Sobic006G036100 Sobic006G036100 Sobic004G034700--Sobic006G036100 Sobic001G020000 Sobic001G020000 Sobic004G034700--Sobic001G020000 Sobic010G138900 Sobic010G138900 Sobic004G034700--Sobic010G138900 Sobic004G034700--Sobic001G248100 Sobic009G007700 Sobic009G007700 Sobic003G209400--Sobic009G007700 Sobic003G209400--Sobic002G412700 Sobic006G112700 Sobic006G112700 Sobic003G209400--Sobic006G112700 Sobic003G209400--Sobic010G085200 Sobic008G080500 Sobic008G080500 Sobic003G209400--Sobic008G080500 Sobic007G097400 Sobic007G097400 Sobic003G209400--Sobic007G097400 Sobic003G209400--Sobic004G034700 Sobic008G017100 Sobic008G017100 Sobic003G209400--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic003G209400--Sobic002G356600 Sobic007G047600--Sobic002G412700 Sobic007G047600--Sobic007G145400 Sobic008G092800 Sobic008G092800 Sobic007G047600--Sobic008G092800 Sobic004G356200 Sobic004G356200 Sobic007G047600--Sobic004G356200 Sobic003G360300 Sobic003G360300 Sobic007G047600--Sobic003G360300 Sobic007G047600--Sobic008G080500 Sobic006G280100 Sobic006G280100 Sobic007G047600--Sobic006G280100 Sobic007G047600--Sobic002G119600 Sobic001G467100 Sobic001G467100 Sobic007G047600--Sobic001G467100 Sobic005G220000 Sobic005G220000 Sobic010G085200--Sobic005G220000 Sobic010G085200--Sobic002G412700 Sobic006G233000 Sobic006G233000 Sobic010G085200--Sobic006G233000 Sobic010G085200--Sobic009G007700 Sobic010G279700 Sobic010G279700 Sobic010G085200--Sobic010G279700 Sobic010G239800 Sobic010G239800 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic010G085200--Sobic003G314700 Sobic010G085200--Sobic003G209400 Sobic001G156900 Sobic001G156900 Sobic002G119600--Sobic001G156900 Sobic002G119600--Sobic010G139500 Sobic002G119600--Sobic007G145400 Sobic002G119600--Sobic004G204100 Sobic002G119600--Sobic010G000800 Sobic002G119600--Sobic002G412700 Sobic005G110499 Sobic005G110499 Sobic002G119600--Sobic005G110499 Sobic002G119600--Sobic001G248100 Sobic003G334700 Sobic003G334700 Sobic002G119600--Sobic003G334700 Sobic010G139500--Sobic004G204100 Sobic010G139500--Sobic003G334700 Sobic010G139500--Sobic002G119600 Sobic010G139500--Sobic003G314700 Sobic010G139500--Sobic003G405500 Sobic010G139500--Sobic008G124800 Sobic010G139500--Sobic002G412700 Sobic010G139500--Sobic007G145400 Sobic010G070600 Sobic010G070600 Sobic010G139500--Sobic010G070600
Octagon: transcription factors


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