Gene annotation
Transcriptome id Sobic.010G085200.1
Synonym Sb10g007370, MED6
Functional annotation mediator of RNA polymerase II transcription subunit 6, putative, expressed
UniProt C5Z6K4
Pfam PF04934
Panther DB PTHR13104
NCBI CDD -
KEGG Orthology K15128; mediator of RNA polymerase II transcription subunit 6
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT3G21350 : RNA polymerase transcriptional regulation mediator-related
RAP-DB (Rice) LOC_Os06g11370.1 : mediator of RNA polymerase II transcription subunit 6, putative, expressed
MaizeGDB (Corn) Zm00025a049537
Brachypodium KQK18996
Barley HORVU7Hr1G036110.2 , HORVU7Hr1G036110.1
Wheat TraesCS7B02G080200 , TraesCS7A02G175100 , TraesCS7D02G176600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
2 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
3 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
4 Sobic.009G007700 expressed protein -
5 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
6 Sobic.010G239800 hydrolase, NUDIX family, domain containing protein, expressed K12613: mRNA-decapping enzyme subunit 2
7 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
8 Sobic.003G314700 expressed protein -
9 Sobic.003G209400 expressed protein -
10 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
11 Sobic.001G078100 expressed protein -
12 Sobic.010G269100 zinc finger family protein, putative, expressed -
13 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
14 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
15 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
16 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
17 Sobic.004G155600 dnaJ domain containing protein, expressed -
18 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
19 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
20 Sobic.007G027700 expressed protein -


Gene co-expression network
sample Sobic010G085200 Sobic010G085200 Sobic005G220000 Sobic005G220000 Sobic010G085200--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic010G085200--Sobic002G412700 Sobic006G233000 Sobic006G233000 Sobic010G085200--Sobic006G233000 Sobic009G007700 Sobic009G007700 Sobic010G085200--Sobic009G007700 Sobic010G279700 Sobic010G279700 Sobic010G085200--Sobic010G279700 Sobic010G239800 Sobic010G239800 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic003G314700 Sobic003G314700 Sobic010G085200--Sobic003G314700 Sobic003G209400 Sobic003G209400 Sobic010G085200--Sobic003G209400 Sobic001G111600 Sobic001G111600 Sobic005G220000--Sobic001G111600 Sobic002G145800 Sobic002G145800 Sobic005G220000--Sobic002G145800 Sobic007G183900 Sobic007G183900 Sobic005G220000--Sobic007G183900 Sobic005G128400 Sobic005G128400 Sobic005G220000--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic005G220000--Sobic003G293200 Sobic007G183300 Sobic007G183300 Sobic005G220000--Sobic007G183300 Sobic003G062300 Sobic003G062300 Sobic005G220000--Sobic003G062300 Sobic005G220000--Sobic010G085200 Sobic001G026500 Sobic001G026500 Sobic005G220000--Sobic001G026500 Sobic001G248100 Sobic001G248100 Sobic002G412700--Sobic001G248100 Sobic003G405500 Sobic003G405500 Sobic002G412700--Sobic003G405500 Sobic002G412700--Sobic003G314700 Sobic004G034700 Sobic004G034700 Sobic002G412700--Sobic004G034700 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic002G412700--Sobic010G085200 Sobic002G119600 Sobic002G119600 Sobic002G412700--Sobic002G119600 Sobic010G139500 Sobic010G139500 Sobic002G412700--Sobic010G139500 Sobic006G010000 Sobic006G010000 Sobic006G233000--Sobic006G010000 Sobic006G233000--Sobic010G085200 Sobic006G233300 Sobic006G233300 Sobic006G233000--Sobic006G233300 Sobic004G155600 Sobic004G155600 Sobic006G233000--Sobic004G155600 Sobic001G259000 Sobic001G259000 Sobic006G233000--Sobic001G259000 Sobic002G394800 Sobic002G394800 Sobic006G233000--Sobic002G394800 Sobic003G439800 Sobic003G439800 Sobic006G233000--Sobic003G439800 Sobic006G270600 Sobic006G270600 Sobic006G233000--Sobic006G270600 Sobic007G134100 Sobic007G134100 Sobic006G233000--Sobic007G134100 Sobic009G007700--Sobic003G209400 Sobic009G007700--Sobic010G085200 Sobic003G127500 Sobic003G127500 Sobic009G007700--Sobic003G127500 Sobic009G007700--Sobic004G155600 Sobic009G007700--Sobic004G034700 Sobic006G210000 Sobic006G210000 Sobic009G007700--Sobic006G210000 Sobic009G007700--Sobic002G412700 Sobic008G080500 Sobic008G080500 Sobic009G007700--Sobic008G080500 Sobic002G357100 Sobic002G357100 Sobic009G007700--Sobic002G357100 Sobic001G281600 Sobic001G281600 Sobic010G279700--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic010G279700--Sobic008G083000 Sobic003G401100 Sobic003G401100 Sobic010G279700--Sobic003G401100 Sobic001G094900 Sobic001G094900 Sobic010G279700--Sobic001G094900 Sobic007G191700 Sobic007G191700 Sobic010G279700--Sobic007G191700 Sobic005G106500 Sobic005G106500 Sobic010G279700--Sobic005G106500 Sobic008G092300 Sobic008G092300 Sobic010G279700--Sobic008G092300 Sobic007G203200 Sobic007G203200 Sobic010G279700--Sobic007G203200 Sobic004G021200 Sobic004G021200 Sobic010G279700--Sobic004G021200 Sobic003G099300 Sobic003G099300 Sobic010G239800--Sobic003G099300 Sobic007G027700 Sobic007G027700 Sobic010G239800--Sobic007G027700 Sobic010G239800--Sobic010G085200 Sobic010G269100 Sobic010G269100 Sobic010G239800--Sobic010G269100 Sobic010G239800--Sobic006G233300 Sobic010G232900 Sobic010G232900 Sobic010G239800--Sobic010G232900 Sobic010G239800--Sobic010G279700 Sobic010G239800--Sobic008G092300 Sobic010G239800--Sobic002G145800 Sobic004G096500 Sobic004G096500 Sobic007G011600--Sobic004G096500 Sobic010G145800 Sobic010G145800 Sobic007G011600--Sobic010G145800 Sobic007G011600--Sobic002G145800 Sobic006G222300 Sobic006G222300 Sobic007G011600--Sobic006G222300 Sobic007G011600--Sobic010G279700 Sobic007G011600--Sobic005G220000 Sobic007G091600 Sobic007G091600 Sobic007G011600--Sobic007G091600 Sobic005G079800 Sobic005G079800 Sobic007G011600--Sobic005G079800 Sobic008G011100 Sobic008G011100 Sobic007G011600--Sobic008G011100 Sobic003G029600 Sobic003G029600 Sobic003G314700--Sobic003G029600 Sobic008G124800 Sobic008G124800 Sobic003G314700--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G314700--Sobic003G405500 Sobic007G019300 Sobic007G019300 Sobic003G314700--Sobic007G019300 Sobic004G204100 Sobic004G204100 Sobic003G314700--Sobic004G204100 Sobic001G426600 Sobic001G426600 Sobic003G314700--Sobic001G426600 Sobic003G314700--Sobic002G412700 Sobic003G209400--Sobic009G007700 Sobic003G209400--Sobic002G412700 Sobic006G112700 Sobic006G112700 Sobic003G209400--Sobic006G112700 Sobic003G209400--Sobic010G085200 Sobic003G209400--Sobic008G080500 Sobic007G097400 Sobic007G097400 Sobic003G209400--Sobic007G097400 Sobic003G209400--Sobic004G034700 Sobic008G017100 Sobic008G017100 Sobic003G209400--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic003G209400--Sobic002G356600
Octagon: transcription factors


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