Gene annotation
Transcriptome id Sobic.006G272200.1
Synonym Sb06g033360
Functional annotation cleavage and polyadenylation specificity factor subunit 5, putative, expressed
UniProt C5YAN4
Pfam PF13869
Panther DB PTHR13047
NCBI CDD KOG1689; mRNA cleavage factor I subunit
KEGG Orthology K14397; NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
Gene Ontology GO:0006378; mRNA polyadenylation GO:0005849mRNA cleavage factor complex GO:0003729mRNA binding


Orthologs (automatic annotation)
TAIR AT4G25550 : Cleavage/polyadenylation specificity factor, 25kDa subunit
RAP-DB (Rice) LOC_Os04g58640.1 : cleavage and polyadenylation specificity factor subunit 5, putative, expressed
MaizeGDB (Corn) Zm00025a057409 , Zm00025a009246
Brachypodium PNT62183 , PNT62185
Barley HORVU2Hr1G124110.3 , HORVU2Hr1G124110.2 , HORVU2Hr1G124110.1 , HORVU1Hr1G081030.1 , HORVU1Hr1G081030.2 , HORVU0Hr1G001450.2 , HORVU0Hr1G001450.3 , HORVU0Hr1G001450.1
Wheat TraesCS1D02G355400 , TraesCS2D02G592500 , TraesCS2D02G592500 , TraesCS1B02G366600 , TraesCS2A02G580600 , TraesCS1A02G355100 , TraesCS2B02G608100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G272200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
2 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
3 Sobic.001G362300 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
4 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
5 Sobic.009G007700 expressed protein -
6 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
7 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
8 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
9 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
10 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
11 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
12 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
13 Sobic.003G209400 expressed protein -
14 Sobic.007G134100 expressed protein -
15 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
16 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
17 Sobic.002G356600 ZCW7, putative, expressed -
18 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
19 Sobic.010G202500 C2 domain containing protein, putative, expressed -
20 Sobic.006G271700 L-asparaginase precursor protein, putative, expressed K08657: taspase, threonine aspartase, 1


Gene co-expression network
sample Sobic006G272200 Sobic006G272200 Sobic010G085200 Sobic010G085200 Sobic006G272200--Sobic010G085200 Sobic003G119400 Sobic003G119400 Sobic006G272200--Sobic003G119400 Sobic001G362300 Sobic001G362300 Sobic006G272200--Sobic001G362300 Sobic002G394800 Sobic002G394800 Sobic006G272200--Sobic002G394800 Sobic009G007700 Sobic009G007700 Sobic006G272200--Sobic009G007700 Sobic004G074300 Sobic004G074300 Sobic006G272200--Sobic004G074300 Sobic001G370300 Sobic001G370300 Sobic006G272200--Sobic001G370300 Sobic006G233000 Sobic006G233000 Sobic006G272200--Sobic006G233000 Sobic008G009600 Sobic008G009600 Sobic006G272200--Sobic008G009600 Sobic005G220000 Sobic005G220000 Sobic010G085200--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic010G085200--Sobic002G412700 Sobic010G085200--Sobic006G233000 Sobic010G085200--Sobic009G007700 Sobic010G279700 Sobic010G279700 Sobic010G085200--Sobic010G279700 Sobic010G239800 Sobic010G239800 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic003G314700 Sobic003G314700 Sobic010G085200--Sobic003G314700 Sobic003G209400 Sobic003G209400 Sobic010G085200--Sobic003G209400 Sobic003G119400--Sobic004G074300 Sobic001G041200 Sobic001G041200 Sobic003G119400--Sobic001G041200 Sobic002G259400 Sobic002G259400 Sobic003G119400--Sobic002G259400 Sobic010G146600 Sobic010G146600 Sobic003G119400--Sobic010G146600 Sobic006G216000 Sobic006G216000 Sobic003G119400--Sobic006G216000 Sobic003G119400--Sobic006G272200 Sobic006G242300 Sobic006G242300 Sobic003G119400--Sobic006G242300 Sobic002G268400 Sobic002G268400 Sobic003G119400--Sobic002G268400 Sobic002G306400 Sobic002G306400 Sobic003G119400--Sobic002G306400 Sobic001G362300--Sobic006G272200 Sobic001G485600 Sobic001G485600 Sobic001G362300--Sobic001G485600 Sobic004G087600 Sobic004G087600 Sobic001G362300--Sobic004G087600 Sobic002G238000 Sobic002G238000 Sobic001G362300--Sobic002G238000 Sobic008G165900 Sobic008G165900 Sobic001G362300--Sobic008G165900 Sobic005G100900 Sobic005G100900 Sobic001G362300--Sobic005G100900 Sobic003G123000 Sobic003G123000 Sobic001G362300--Sobic003G123000 Sobic002G399200 Sobic002G399200 Sobic001G362300--Sobic002G399200 Sobic002G146400 Sobic002G146400 Sobic001G362300--Sobic002G146400 Sobic006G233300 Sobic006G233300 Sobic002G394800--Sobic006G233300 Sobic002G143900 Sobic002G143900 Sobic002G394800--Sobic002G143900 Sobic002G394800--Sobic006G233000 Sobic002G280600 Sobic002G280600 Sobic002G394800--Sobic002G280600 Sobic006G245700 Sobic006G245700 Sobic002G394800--Sobic006G245700 Sobic002G394800--Sobic006G272200 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G430900 Sobic002G430900 Sobic002G394800--Sobic002G430900 Sobic009G007700--Sobic003G209400 Sobic009G007700--Sobic010G085200 Sobic003G127500 Sobic003G127500 Sobic009G007700--Sobic003G127500 Sobic004G155600 Sobic004G155600 Sobic009G007700--Sobic004G155600 Sobic004G034700 Sobic004G034700 Sobic009G007700--Sobic004G034700 Sobic006G210000 Sobic006G210000 Sobic009G007700--Sobic006G210000 Sobic009G007700--Sobic002G412700 Sobic008G080500 Sobic008G080500 Sobic009G007700--Sobic008G080500 Sobic002G357100 Sobic002G357100 Sobic009G007700--Sobic002G357100 Sobic004G074300--Sobic002G268400 Sobic004G074300--Sobic003G119400 Sobic001G152000 Sobic001G152000 Sobic004G074300--Sobic001G152000 Sobic009G033900 Sobic009G033900 Sobic004G074300--Sobic009G033900 Sobic001G263000 Sobic001G263000 Sobic004G074300--Sobic001G263000 Sobic004G074300--Sobic002G259400 Sobic010G057900 Sobic010G057900 Sobic004G074300--Sobic010G057900 Sobic004G077600 Sobic004G077600 Sobic004G074300--Sobic004G077600 Sobic006G054500 Sobic006G054500 Sobic004G074300--Sobic006G054500 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic001G370300--Sobic006G245700 Sobic010G247400 Sobic010G247400 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic006G010000 Sobic006G010000 Sobic006G233000--Sobic006G010000 Sobic006G233000--Sobic010G085200 Sobic006G233000--Sobic006G233300 Sobic006G233000--Sobic004G155600 Sobic001G259000 Sobic001G259000 Sobic006G233000--Sobic001G259000 Sobic006G233000--Sobic002G394800 Sobic006G233000--Sobic003G439800 Sobic006G270600 Sobic006G270600 Sobic006G233000--Sobic006G270600 Sobic007G134100 Sobic007G134100 Sobic006G233000--Sobic007G134100 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic004G011000 Sobic004G011000 Sobic008G009600--Sobic004G011000 Sobic001G017700 Sobic001G017700 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic010G073200 Sobic010G073200 Sobic008G009600--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic008G009600--Sobic003G407600 Sobic001G145400 Sobic001G145400 Sobic008G009600--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic008G009600--Sobic009G101200 Sobic006G226300 Sobic006G226300 Sobic008G009600--Sobic006G226300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.