Gene annotation
Transcriptome id Sobic.003G246000.1
Synonym Sb03g030230
Functional annotation exosome complex exonuclease RRP40, putative, expressed
UniProt C5XFW6
Pfam PF15985
Panther DB PTHR21321
NCBI CDD KOG1004; Exosomal 3'-5' exoribonuclease complex subunit Rrp40
KEGG Orthology K03681; RRP40, exosome complex component RRP40
Gene Ontology GO:0003723; RNA binding GO:0000178exosome (RNase complex)


Orthologs (automatic annotation)
TAIR AT4G32175 : PNAS-3 related
RAP-DB (Rice) LOC_Os01g66730.1 : exosome complex exonuclease RRP40, putative, expressed
MaizeGDB (Corn) Zm00025a028164 , Zm00025a028167
Brachypodium KQK09042 , KQK09041
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G246000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
2 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
3 Sobic.004G141800 expressed protein -
4 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
5 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
6 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
7 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
8 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
9 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
10 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
11 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
12 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
13 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
14 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
15 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
16 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
17 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
18 Sobic.001G241300 expressed protein -
19 Sobic.002G075900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed K12670: oligosaccharyltransferase complex subunit beta
20 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase


Gene co-expression network
sample Sobic003G246000 Sobic003G246000 Sobic001G085800 Sobic001G085800 Sobic003G246000--Sobic001G085800 Sobic001G408600 Sobic001G408600 Sobic003G246000--Sobic001G408600 Sobic004G141800 Sobic004G141800 Sobic003G246000--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic003G246000--Sobic002G430300 Sobic001G145400 Sobic001G145400 Sobic003G246000--Sobic001G145400 Sobic002G386600 Sobic002G386600 Sobic003G246000--Sobic002G386600 Sobic006G125900 Sobic006G125900 Sobic003G246000--Sobic006G125900 Sobic002G160700 Sobic002G160700 Sobic003G246000--Sobic002G160700 Sobic005G199200 Sobic005G199200 Sobic003G246000--Sobic005G199200 Sobic001G085800--Sobic003G246000 Sobic005G115500 Sobic005G115500 Sobic001G085800--Sobic005G115500 Sobic002G364900 Sobic002G364900 Sobic001G085800--Sobic002G364900 Sobic001G085800--Sobic002G160700 Sobic002G145800 Sobic002G145800 Sobic001G085800--Sobic002G145800 Sobic006G058800 Sobic006G058800 Sobic001G085800--Sobic006G058800 Sobic001G085800--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic001G085800--Sobic004G356200 Sobic001G469200 Sobic001G469200 Sobic001G085800--Sobic001G469200 Sobic001G408600--Sobic003G246000 Sobic001G373000 Sobic001G373000 Sobic001G408600--Sobic001G373000 Sobic001G461300 Sobic001G461300 Sobic001G408600--Sobic001G461300 Sobic007G089800 Sobic007G089800 Sobic001G408600--Sobic007G089800 Sobic001G004100 Sobic001G004100 Sobic001G408600--Sobic001G004100 Sobic001G408600--Sobic006G125900 Sobic009G211200 Sobic009G211200 Sobic001G408600--Sobic009G211200 Sobic006G002800 Sobic006G002800 Sobic001G408600--Sobic006G002800 Sobic001G408600--Sobic001G145400 Sobic004G141800--Sobic002G430300 Sobic003G405500 Sobic003G405500 Sobic004G141800--Sobic003G405500 Sobic004G236800 Sobic004G236800 Sobic004G141800--Sobic004G236800 Sobic002G227500 Sobic002G227500 Sobic004G141800--Sobic002G227500 Sobic001G030000 Sobic001G030000 Sobic004G141800--Sobic001G030000 Sobic003G143800 Sobic003G143800 Sobic004G141800--Sobic003G143800 Sobic003G312700 Sobic003G312700 Sobic004G141800--Sobic003G312700 Sobic001G035200 Sobic001G035200 Sobic004G141800--Sobic001G035200 Sobic004G141800--Sobic002G386600 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic002G430300--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic002G430300--Sobic003G152400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic001G087600 Sobic001G087600 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G430300--Sobic002G145800 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic002G386900 Sobic002G386900 Sobic002G386600--Sobic002G386900 Sobic006G029100 Sobic006G029100 Sobic002G386600--Sobic006G029100 Sobic002G386600--Sobic004G141800 Sobic006G265600 Sobic006G265600 Sobic002G386600--Sobic006G265600 Sobic002G398700 Sobic002G398700 Sobic002G386600--Sobic002G398700 Sobic002G386600--Sobic002G160700 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic002G386600--Sobic003G246000 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic001G151600 Sobic001G151600 Sobic002G160700--Sobic001G151600 Sobic002G371600 Sobic002G371600 Sobic002G160700--Sobic002G371600 Sobic002G160700--Sobic006G029100 Sobic001G248100 Sobic001G248100 Sobic002G160700--Sobic001G248100 Sobic002G160700--Sobic006G265600 Sobic002G199400 Sobic002G199400 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic004G030400 Sobic004G030400 Sobic002G160700--Sobic004G030400 Sobic002G160700--Sobic005G115500 Sobic001G090300 Sobic001G090300 Sobic005G199200--Sobic001G090300 Sobic003G184400 Sobic003G184400 Sobic005G199200--Sobic003G184400 Sobic004G128200 Sobic004G128200 Sobic005G199200--Sobic004G128200 Sobic001G334100 Sobic001G334100 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic005G199200--Sobic001G373000 Sobic010G278600 Sobic010G278600 Sobic005G199200--Sobic010G278600 Sobic002G142600 Sobic002G142600 Sobic005G199200--Sobic002G142600 Sobic005G199200--Sobic003G246000
Octagon: transcription factors


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