Gene annotation
Transcriptome id Sobic.001G085800.2,Sobic.001G085800.1
Synonym Sb01g007730
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QHY2 , Q8LKU8
Pfam PF00400
Panther DB PTHR22840
NCBI CDD KOG0640; mRNA cleavage stimulating factor complex
KEGG Orthology K14406; cleavage stimulation factor subunit 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G60940 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g54770.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008203
Brachypodium KQK13140 , KQK13141 , KQK13142
Barley HORVU5Hr1G095960.8 , HORVU5Hr1G095960.9 , HORVU5Hr1G095960.6 , HORVU5Hr1G095960.7 , HORVU5Hr1G095960.4 , HORVU5Hr1G095960.5 , HORVU5Hr1G095960.2 , HORVU5Hr1G095960.3 , HORVU5Hr1G095960.1 , HORVU5Hr1G095960.14 , HORVU5Hr1G095960.10 , HORVU5Hr1G095960.11 , HORVU5Hr1G095960.12 , HORVU5Hr1G095960.13
Wheat TraesCS5D02G402200 , TraesCS5D02G402200 , TraesCS5A02G392400 , TraesCS5B02G397200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
2 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
3 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
4 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
5 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
6 Sobic.006G058800 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
7 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
8 Sobic.004G356200 expressed protein -
9 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
10 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
11 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
12 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
13 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
14 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
15 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
16 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
17 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
18 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
19 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
20 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5


Gene co-expression network
sample Sobic001G085800 Sobic001G085800 Sobic003G246000 Sobic003G246000 Sobic001G085800--Sobic003G246000 Sobic005G115500 Sobic005G115500 Sobic001G085800--Sobic005G115500 Sobic002G364900 Sobic002G364900 Sobic001G085800--Sobic002G364900 Sobic002G160700 Sobic002G160700 Sobic001G085800--Sobic002G160700 Sobic002G145800 Sobic002G145800 Sobic001G085800--Sobic002G145800 Sobic006G058800 Sobic006G058800 Sobic001G085800--Sobic006G058800 Sobic002G386600 Sobic002G386600 Sobic001G085800--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic001G085800--Sobic004G356200 Sobic001G469200 Sobic001G469200 Sobic001G085800--Sobic001G469200 Sobic003G246000--Sobic001G085800 Sobic001G408600 Sobic001G408600 Sobic003G246000--Sobic001G408600 Sobic004G141800 Sobic004G141800 Sobic003G246000--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic003G246000--Sobic002G430300 Sobic001G145400 Sobic001G145400 Sobic003G246000--Sobic001G145400 Sobic003G246000--Sobic002G386600 Sobic006G125900 Sobic006G125900 Sobic003G246000--Sobic006G125900 Sobic003G246000--Sobic002G160700 Sobic005G199200 Sobic005G199200 Sobic003G246000--Sobic005G199200 Sobic001G291800 Sobic001G291800 Sobic005G115500--Sobic001G291800 Sobic005G115500--Sobic001G145400 Sobic001G248100 Sobic001G248100 Sobic005G115500--Sobic001G248100 Sobic005G115500--Sobic002G145800 Sobic003G099300 Sobic003G099300 Sobic005G115500--Sobic003G099300 Sobic007G183300 Sobic007G183300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic005G115500--Sobic002G430300 Sobic001G051700 Sobic001G051700 Sobic005G115500--Sobic001G051700 Sobic003G304400 Sobic003G304400 Sobic002G364900--Sobic003G304400 Sobic010G192600 Sobic010G192600 Sobic002G364900--Sobic010G192600 Sobic006G265600 Sobic006G265600 Sobic002G364900--Sobic006G265600 Sobic001G015400 Sobic001G015400 Sobic002G364900--Sobic001G015400 Sobic002G227500 Sobic002G227500 Sobic002G364900--Sobic002G227500 Sobic006G106300 Sobic006G106300 Sobic002G364900--Sobic006G106300 Sobic001G099900 Sobic001G099900 Sobic002G364900--Sobic001G099900 Sobic002G364900--Sobic001G085800 Sobic001G474400 Sobic001G474400 Sobic002G364900--Sobic001G474400 Sobic001G151600 Sobic001G151600 Sobic002G160700--Sobic001G151600 Sobic002G371600 Sobic002G371600 Sobic002G160700--Sobic002G371600 Sobic006G029100 Sobic006G029100 Sobic002G160700--Sobic006G029100 Sobic002G160700--Sobic001G248100 Sobic002G160700--Sobic006G265600 Sobic002G199400 Sobic002G199400 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic004G030400 Sobic004G030400 Sobic002G160700--Sobic004G030400 Sobic002G160700--Sobic005G115500 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic008G147200 Sobic008G147200 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic006G058800--Sobic001G085800 Sobic006G089400 Sobic006G089400 Sobic006G058800--Sobic006G089400 Sobic003G134000 Sobic003G134000 Sobic006G058800--Sobic003G134000 Sobic006G058800--Sobic003G246000 Sobic006G058800--Sobic006G125900 Sobic004G176000 Sobic004G176000 Sobic006G058800--Sobic004G176000 Sobic006G058800--Sobic002G386600 Sobic002G092050 Sobic002G092050 Sobic006G058800--Sobic002G092050 Sobic007G097400 Sobic007G097400 Sobic006G058800--Sobic007G097400 Sobic002G386900 Sobic002G386900 Sobic002G386600--Sobic002G386900 Sobic002G386600--Sobic006G029100 Sobic002G386600--Sobic004G141800 Sobic002G386600--Sobic006G265600 Sobic002G398700 Sobic002G398700 Sobic002G386600--Sobic002G398700 Sobic002G386600--Sobic002G160700 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic002G386600--Sobic003G246000 Sobic001G200200 Sobic001G200200 Sobic004G356200--Sobic001G200200 Sobic004G356200--Sobic002G371600 Sobic005G031000 Sobic005G031000 Sobic004G356200--Sobic005G031000 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G356200--Sobic004G030400 Sobic004G356200--Sobic001G085800 Sobic001G469200--Sobic002G199400 Sobic001G115500 Sobic001G115500 Sobic001G469200--Sobic001G115500 Sobic001G469200--Sobic001G085800 Sobic001G469200--Sobic005G115500 Sobic003G132000 Sobic003G132000 Sobic001G469200--Sobic003G132000 Sobic004G075200 Sobic004G075200 Sobic001G469200--Sobic004G075200 Sobic010G108900 Sobic010G108900 Sobic001G469200--Sobic010G108900 Sobic006G245700 Sobic006G245700 Sobic001G469200--Sobic006G245700 Sobic001G487100 Sobic001G487100 Sobic001G469200--Sobic001G487100
Octagon: transcription factors


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