Gene annotation
Transcriptome id Sobic.001G469200.1
Synonym FUS8, COP14, Sb01g043970, CSN4, EMB134, ATS4, COP8, FUS4
Functional annotation proteasome subunit, putative, expressed
UniProt C5WUN5
Pfam PF01399
Panther DB PTHR10855 PTHR10855:SF2
NCBI CDD -
KEGG Orthology K12178; COPS4, COP9 signalosome complex subunit 4
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G42970 : Proteasome component (PCI) domain protein
RAP-DB (Rice) LOC_Os03g10120.2 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a001204
Brachypodium KQK23109 , KQK23110
Barley HORVU4Hr1G070980.5 , HORVU4Hr1G070980.6 , HORVU4Hr1G070980.7 , HORVU4Hr1G070980.1 , HORVU4Hr1G070980.2 , HORVU4Hr1G070980.3 , HORVU4Hr1G070980.8 , HORVU4Hr1G070980.9 , HORVU4Hr1G070980.10 , HORVU4Hr1G070980.11
Wheat TraesCS4B02G262600 , TraesCS4D02G262700 , TraesCS4A02G041600
Populus PNT51857 , PNT51859 , PNT51858


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cDNA sequences
Sobic.001G469200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G199400 growth regulator related protein, putative, expressed -
2 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
3 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
4 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
5 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
6 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
7 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
8 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
9 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
10 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
11 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
12 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
13 Sobic.005G144201 - -
14 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
15 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
16 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
17 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
18 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
19 Sobic.008G118500 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
20 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M


Gene co-expression network
sample Sobic001G469200 Sobic001G469200 Sobic002G199400 Sobic002G199400 Sobic001G469200--Sobic002G199400 Sobic001G115500 Sobic001G115500 Sobic001G469200--Sobic001G115500 Sobic001G085800 Sobic001G085800 Sobic001G469200--Sobic001G085800 Sobic005G115500 Sobic005G115500 Sobic001G469200--Sobic005G115500 Sobic003G132000 Sobic003G132000 Sobic001G469200--Sobic003G132000 Sobic004G075200 Sobic004G075200 Sobic001G469200--Sobic004G075200 Sobic010G108900 Sobic010G108900 Sobic001G469200--Sobic010G108900 Sobic006G245700 Sobic006G245700 Sobic001G469200--Sobic006G245700 Sobic001G487100 Sobic001G487100 Sobic001G469200--Sobic001G487100 Sobic002G160700 Sobic002G160700 Sobic002G199400--Sobic002G160700 Sobic001G151600 Sobic001G151600 Sobic002G199400--Sobic001G151600 Sobic002G199400--Sobic001G469200 Sobic001G358500 Sobic001G358500 Sobic002G199400--Sobic001G358500 Sobic006G259900 Sobic006G259900 Sobic002G199400--Sobic006G259900 Sobic006G282200 Sobic006G282200 Sobic002G199400--Sobic006G282200 Sobic005G175000 Sobic005G175000 Sobic002G199400--Sobic005G175000 Sobic004G030400 Sobic004G030400 Sobic002G199400--Sobic004G030400 Sobic005G144201 Sobic005G144201 Sobic002G199400--Sobic005G144201 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic002G208400 Sobic002G208400 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic003G246000 Sobic003G246000 Sobic001G085800--Sobic003G246000 Sobic001G085800--Sobic005G115500 Sobic002G364900 Sobic002G364900 Sobic001G085800--Sobic002G364900 Sobic001G085800--Sobic002G160700 Sobic002G145800 Sobic002G145800 Sobic001G085800--Sobic002G145800 Sobic006G058800 Sobic006G058800 Sobic001G085800--Sobic006G058800 Sobic002G386600 Sobic002G386600 Sobic001G085800--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic001G085800--Sobic004G356200 Sobic001G085800--Sobic001G469200 Sobic001G291800 Sobic001G291800 Sobic005G115500--Sobic001G291800 Sobic001G145400 Sobic001G145400 Sobic005G115500--Sobic001G145400 Sobic001G248100 Sobic001G248100 Sobic005G115500--Sobic001G248100 Sobic005G115500--Sobic002G145800 Sobic003G099300 Sobic003G099300 Sobic005G115500--Sobic003G099300 Sobic007G183300 Sobic007G183300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic002G430300 Sobic002G430300 Sobic005G115500--Sobic002G430300 Sobic001G051700 Sobic001G051700 Sobic005G115500--Sobic001G051700 Sobic001G114500 Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic009G207200 Sobic009G207200 Sobic004G075200--Sobic009G207200 Sobic004G075200--Sobic001G469200 Sobic004G075200--Sobic008G125000 Sobic001G467100 Sobic001G467100 Sobic004G075200--Sobic001G467100 Sobic007G047600 Sobic007G047600 Sobic004G075200--Sobic007G047600 Sobic006G029400 Sobic006G029400 Sobic004G075200--Sobic006G029400 Sobic004G256300 Sobic004G256300 Sobic004G075200--Sobic004G256300 Sobic004G075200--Sobic003G008600 Sobic004G075200--Sobic006G245700 Sobic001G380500 Sobic001G380500 Sobic010G108900--Sobic001G380500 Sobic001G218800 Sobic001G218800 Sobic010G108900--Sobic001G218800 Sobic006G168400 Sobic006G168400 Sobic010G108900--Sobic006G168400 Sobic003G004700 Sobic003G004700 Sobic010G108900--Sobic003G004700 Sobic006G183000 Sobic006G183000 Sobic010G108900--Sobic006G183000 Sobic010G108900--Sobic001G469200 Sobic002G262000 Sobic002G262000 Sobic010G108900--Sobic002G262000 Sobic009G108500 Sobic009G108500 Sobic010G108900--Sobic009G108500 Sobic006G109700 Sobic006G109700 Sobic010G108900--Sobic006G109700 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic001G487100--Sobic004G256300 Sobic001G487100--Sobic005G115500
Octagon: transcription factors


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