Gene annotation
Transcriptome id Sobic.008G118500.1
Synonym Sb08g017220
Functional annotation tRNA synthetase, putative, expressed
UniProt C5YPE5
Pfam PF00579
Panther DB PTHR10055:SF1 PTHR10055
NCBI CDD -
KEGG Orthology K01867; WARS, tryptophanyl-tRNA synthetase
Gene Ontology GO:0004830; tryptophan-tRNA ligase activity GO:0005737cytoplasm GO:0006436tryptophanyl-tRNA aminoacylation GO:0000166nucleotide binding GO:0004812aminoacyl-tRNA ligase activity GO:0005524ATP binding GO:0006418tRNA aminoacylation for protein translation


Orthologs (automatic annotation)
TAIR AT3G04600 : Nucleotidylyl transferase superfamily protein
RAP-DB (Rice) LOC_Os12g35570.1 : tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a007754
Brachypodium KQJ86450
Barley HORVU5Hr1G025320.3 , HORVU5Hr1G025320.1 , HORVU5Hr1G025320.6 , HORVU5Hr1G025320.2 , HORVU5Hr1G025320.7 , HORVU5Hr1G025320.5 , HORVU5Hr1G025320.4
Wheat TraesCS7D02G260000 , TraesCS5B02G100000 , TraesCS5A02G093900 , TraesCS5A02G093900 , TraesCS5D02G106300 , TraesCS5D02G106300
Populus -


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cDNA sequences
Sobic.008G118500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
2 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
3 Sobic.009G102900 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
4 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
5 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
6 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
7 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
8 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
9 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
10 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
11 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
12 Sobic.001G426100 enolase, putative, expressed K01689: ENO, enolase
13 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
14 Sobic.004G013100 signal peptide peptidase domain containing protein, expressed K09595: minor histocompatibility antigen H13
15 Sobic.004G067400 expressed protein -
16 Sobic.001G456800 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
17 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
18 Sobic.005G187400 A49-like RNA polymerase I associated factor family protein, expressed K03005: RPA49, DNA-directed RNA polymerase I subunit RPA49
19 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
20 Sobic.009G030400 eyes absent homolog 4, putative, expressed -


Gene co-expression network
sample Sobic008G118500 Sobic008G118500 Sobic001G178400 Sobic001G178400 Sobic008G118500--Sobic001G178400 Sobic006G087100 Sobic006G087100 Sobic008G118500--Sobic006G087100 Sobic009G102900 Sobic009G102900 Sobic008G118500--Sobic009G102900 Sobic009G002000 Sobic009G002000 Sobic008G118500--Sobic009G002000 Sobic010G220900 Sobic010G220900 Sobic008G118500--Sobic010G220900 Sobic001G469200 Sobic001G469200 Sobic008G118500--Sobic001G469200 Sobic001G291800 Sobic001G291800 Sobic008G118500--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic008G118500--Sobic009G258400 Sobic001G346300 Sobic001G346300 Sobic008G118500--Sobic001G346300 Sobic001G178400--Sobic008G118500 Sobic001G178400--Sobic001G291800 Sobic001G178400--Sobic009G102900 Sobic001G007800 Sobic001G007800 Sobic001G178400--Sobic001G007800 Sobic001G178400--Sobic001G469200 Sobic001G455800 Sobic001G455800 Sobic001G178400--Sobic001G455800 Sobic004G307500 Sobic004G307500 Sobic001G178400--Sobic004G307500 Sobic002G365900 Sobic002G365900 Sobic001G178400--Sobic002G365900 Sobic008G160000 Sobic008G160000 Sobic001G178400--Sobic008G160000 Sobic006G087100--Sobic010G220900 Sobic004G019600 Sobic004G019600 Sobic006G087100--Sobic004G019600 Sobic006G087100--Sobic001G346300 Sobic009G108500 Sobic009G108500 Sobic006G087100--Sobic009G108500 Sobic006G087100--Sobic008G118500 Sobic004G133700 Sobic004G133700 Sobic006G087100--Sobic004G133700 Sobic001G218800 Sobic001G218800 Sobic006G087100--Sobic001G218800 Sobic003G122000 Sobic003G122000 Sobic006G087100--Sobic003G122000 Sobic002G359900 Sobic002G359900 Sobic006G087100--Sobic002G359900 Sobic001G115500 Sobic001G115500 Sobic009G102900--Sobic001G115500 Sobic003G198300 Sobic003G198300 Sobic009G102900--Sobic003G198300 Sobic009G102900--Sobic001G178400 Sobic004G249300 Sobic004G249300 Sobic009G102900--Sobic004G249300 Sobic009G102900--Sobic008G118500 Sobic009G102900--Sobic009G002000 Sobic001G008500 Sobic001G008500 Sobic009G102900--Sobic001G008500 Sobic009G102900--Sobic001G346300 Sobic004G047200 Sobic004G047200 Sobic009G102900--Sobic004G047200 Sobic002G277200 Sobic002G277200 Sobic009G002000--Sobic002G277200 Sobic009G030400 Sobic009G030400 Sobic009G002000--Sobic009G030400 Sobic009G201800 Sobic009G201800 Sobic009G002000--Sobic009G201800 Sobic009G002000--Sobic001G115500 Sobic009G002000--Sobic008G118500 Sobic005G084900 Sobic005G084900 Sobic009G002000--Sobic005G084900 Sobic009G002000--Sobic009G102900 Sobic001G157600 Sobic001G157600 Sobic009G002000--Sobic001G157600 Sobic009G258500 Sobic009G258500 Sobic009G002000--Sobic009G258500 Sobic010G220900--Sobic006G087100 Sobic010G220900--Sobic004G019600 Sobic010G220900--Sobic009G258400 Sobic001G532100 Sobic001G532100 Sobic010G220900--Sobic001G532100 Sobic010G220900--Sobic009G201800 Sobic009G212300 Sobic009G212300 Sobic010G220900--Sobic009G212300 Sobic010G220900--Sobic004G249300 Sobic010G220900--Sobic008G118500 Sobic010G220900--Sobic001G469200 Sobic002G199400 Sobic002G199400 Sobic001G469200--Sobic002G199400 Sobic001G469200--Sobic001G115500 Sobic001G085800 Sobic001G085800 Sobic001G469200--Sobic001G085800 Sobic005G115500 Sobic005G115500 Sobic001G469200--Sobic005G115500 Sobic003G132000 Sobic003G132000 Sobic001G469200--Sobic003G132000 Sobic004G075200 Sobic004G075200 Sobic001G469200--Sobic004G075200 Sobic010G108900 Sobic010G108900 Sobic001G469200--Sobic010G108900 Sobic006G245700 Sobic006G245700 Sobic001G469200--Sobic006G245700 Sobic001G487100 Sobic001G487100 Sobic001G469200--Sobic001G487100 Sobic004G340400 Sobic004G340400 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic009G258400--Sobic001G291800 Sobic009G258400--Sobic003G132000 Sobic001G507400 Sobic001G507400 Sobic009G258400--Sobic001G507400 Sobic001G346300--Sobic004G019600 Sobic001G346300--Sobic006G087100 Sobic001G346300--Sobic001G291800 Sobic001G346300--Sobic009G258400 Sobic001G346300--Sobic010G186600 Sobic006G010000 Sobic006G010000 Sobic001G346300--Sobic006G010000 Sobic001G152000 Sobic001G152000 Sobic001G346300--Sobic001G152000 Sobic004G212700 Sobic004G212700 Sobic001G346300--Sobic004G212700 Sobic006G233300 Sobic006G233300 Sobic001G346300--Sobic006G233300
Octagon: transcription factors


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