Gene annotation
Transcriptome id Sobic.009G102900.1
Synonym Sb09g016470
Functional annotation importin subunit beta, putative, expressed
UniProt C5YWA7
Pfam PF03810 PF13513
Panther DB PTHR10527 PTHR10527:SF19
NCBI CDD -
KEGG Orthology K14293; KPNB1, importin subunit beta-1
Gene Ontology GO:0008536; Ran GTPase binding GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT3G08947 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os05g28510.4 : importin subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a037666 , Zm00025a043478
Brachypodium KQJ85627
Barley HORVU1Hr1G060180.9 , HORVU1Hr1G060180.6 , HORVU1Hr1G060180.4 , HORVU1Hr1G060180.5 , HORVU1Hr1G060180.7 , HORVU1Hr1G060180.1 , HORVU1Hr1G060180.2 , HORVU1Hr1G060180.3 , HORVU1Hr1G060180.8 , HORVU1Hr1G013580.2 , HORVU1Hr1G013580.3 , HORVU1Hr1G013580.1 , HORVU1Hr1G013580.4 , HORVU1Hr1G013580.5
Wheat TraesCS1A02G065600 , TraesCS1B02G083800 , TraesCS1D02G066600 , TraesCS1B02G236100 , TraesCS1B02G236100 , TraesCS1B02G236100 , TraesCS1D02G224400 , TraesCS1D02G224400 , TraesCS1A02G222800 , TraesCS1A02G222800 , TraesCS1A02G222800 , TraesCS7B02G222000 , TraesCS1A02G065000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
2 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
3 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
4 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
5 Sobic.008G118500 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
6 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
7 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
8 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
9 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
10 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
11 Sobic.010G250100 "CIL, CIA2 like (Chloroplast import apparatus)"(PubMedID : 28640841)@CCT motif family protein, expressed -
12 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
13 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
14 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
15 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
16 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
17 Sobic.004G010700 expressed protein -
18 Sobic.002G277200 rRNA-processing protein FCF, putative, expressed K14773: U3 small nucleolar RNA-associated protein 23
19 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
20 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5


Gene co-expression network
sample Sobic009G102900 Sobic009G102900 Sobic001G115500 Sobic001G115500 Sobic009G102900--Sobic001G115500 Sobic003G198300 Sobic003G198300 Sobic009G102900--Sobic003G198300 Sobic001G178400 Sobic001G178400 Sobic009G102900--Sobic001G178400 Sobic004G249300 Sobic004G249300 Sobic009G102900--Sobic004G249300 Sobic008G118500 Sobic008G118500 Sobic009G102900--Sobic008G118500 Sobic009G002000 Sobic009G002000 Sobic009G102900--Sobic009G002000 Sobic001G008500 Sobic001G008500 Sobic009G102900--Sobic001G008500 Sobic001G346300 Sobic001G346300 Sobic009G102900--Sobic001G346300 Sobic004G047200 Sobic004G047200 Sobic009G102900--Sobic004G047200 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic001G115500--Sobic004G249300 Sobic001G115500--Sobic009G102900 Sobic002G208400 Sobic002G208400 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic009G258500 Sobic009G258500 Sobic003G198300--Sobic009G258500 Sobic003G198300--Sobic009G102900 Sobic009G211700 Sobic009G211700 Sobic003G198300--Sobic009G211700 Sobic003G198300--Sobic004G249300 Sobic001G371100 Sobic001G371100 Sobic003G198300--Sobic001G371100 Sobic008G115600 Sobic008G115600 Sobic003G198300--Sobic008G115600 Sobic009G201800 Sobic009G201800 Sobic003G198300--Sobic009G201800 Sobic006G251600 Sobic006G251600 Sobic003G198300--Sobic006G251600 Sobic004G307500 Sobic004G307500 Sobic003G198300--Sobic004G307500 Sobic001G178400--Sobic008G118500 Sobic001G291800 Sobic001G291800 Sobic001G178400--Sobic001G291800 Sobic001G178400--Sobic009G102900 Sobic001G007800 Sobic001G007800 Sobic001G178400--Sobic001G007800 Sobic001G469200 Sobic001G469200 Sobic001G178400--Sobic001G469200 Sobic001G455800 Sobic001G455800 Sobic001G178400--Sobic001G455800 Sobic001G178400--Sobic004G307500 Sobic002G365900 Sobic002G365900 Sobic001G178400--Sobic002G365900 Sobic008G160000 Sobic008G160000 Sobic001G178400--Sobic008G160000 Sobic002G341800 Sobic002G341800 Sobic004G249300--Sobic002G341800 Sobic004G249300--Sobic009G201800 Sobic004G249300--Sobic001G115500 Sobic002G077900 Sobic002G077900 Sobic004G249300--Sobic002G077900 Sobic008G083400 Sobic008G083400 Sobic004G249300--Sobic008G083400 Sobic010G247400 Sobic010G247400 Sobic004G249300--Sobic010G247400 Sobic003G118400 Sobic003G118400 Sobic004G249300--Sobic003G118400 Sobic004G249300--Sobic009G102900 Sobic001G370300 Sobic001G370300 Sobic004G249300--Sobic001G370300 Sobic008G118500--Sobic001G178400 Sobic006G087100 Sobic006G087100 Sobic008G118500--Sobic006G087100 Sobic008G118500--Sobic009G102900 Sobic008G118500--Sobic009G002000 Sobic010G220900 Sobic010G220900 Sobic008G118500--Sobic010G220900 Sobic008G118500--Sobic001G469200 Sobic008G118500--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic008G118500--Sobic009G258400 Sobic008G118500--Sobic001G346300 Sobic002G277200 Sobic002G277200 Sobic009G002000--Sobic002G277200 Sobic009G030400 Sobic009G030400 Sobic009G002000--Sobic009G030400 Sobic009G002000--Sobic009G201800 Sobic009G002000--Sobic001G115500 Sobic009G002000--Sobic008G118500 Sobic005G084900 Sobic005G084900 Sobic009G002000--Sobic005G084900 Sobic009G002000--Sobic009G102900 Sobic001G157600 Sobic001G157600 Sobic009G002000--Sobic001G157600 Sobic009G002000--Sobic009G258500 Sobic001G008500--Sobic004G047200 Sobic001G008500--Sobic006G251600 Sobic001G008500--Sobic003G008600 Sobic001G008500--Sobic001G115500 Sobic009G071700 Sobic009G071700 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G008500--Sobic001G436300 Sobic002G423500 Sobic002G423500 Sobic001G008500--Sobic002G423500 Sobic001G008500--Sobic001G371100 Sobic004G019600 Sobic004G019600 Sobic001G346300--Sobic004G019600 Sobic001G346300--Sobic006G087100 Sobic001G346300--Sobic001G291800 Sobic001G346300--Sobic009G258400 Sobic010G186600 Sobic010G186600 Sobic001G346300--Sobic010G186600 Sobic006G010000 Sobic006G010000 Sobic001G346300--Sobic006G010000 Sobic001G152000 Sobic001G152000 Sobic001G346300--Sobic001G152000 Sobic004G212700 Sobic004G212700 Sobic001G346300--Sobic004G212700 Sobic006G233300 Sobic006G233300 Sobic001G346300--Sobic006G233300 Sobic004G326600 Sobic004G326600 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic004G047200--Sobic002G014400 Sobic004G047200--Sobic001G008500 Sobic005G163700 Sobic005G163700 Sobic004G047200--Sobic005G163700 Sobic001G530800 Sobic001G530800 Sobic004G047200--Sobic001G530800 Sobic004G215700 Sobic004G215700 Sobic004G047200--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic004G047200--Sobic001G460500 Sobic004G047200--Sobic001G371100
Octagon: transcription factors


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