Gene annotation
Transcriptome id Sobic.002G277200.1
Synonym Sb02g031040, MEE21
Functional annotation rRNA-processing protein FCF, putative, expressed
UniProt C5X696
Pfam PF04900
Panther DB PTHR12416 PTHR12416:SF3
NCBI CDD KOG3164; Uncharacterized proteins of PilT N-term./Vapc superfamily
KEGG Orthology K14773; U3 small nucleolar RNA-associated protein 23
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34570 : PIN domain-like family protein
RAP-DB (Rice) LOC_Os02g26850.1 : rRNA-processing protein FCF, putative, expressed
MaizeGDB (Corn) Zm00025a047813
Brachypodium KQK01563 , KQK01562
Barley HORVU5Hr1G018740.2 , HORVU5Hr1G018740.1 , HORVU5Hr1G018740.5 , HORVU5Hr1G018740.3 , HORVU5Hr1G018740.4
Wheat TraesCS5B02G077600 , TraesCS5A02G071500 , TraesCS2A02G229000 , TraesCS5D02G083900 , TraesCS5D02G083900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
2 Sobic.004G010700 expressed protein -
3 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
4 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
5 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
6 Sobic.003G410400 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.009G102900 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
8 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
9 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
10 Sobic.008G018800 EMB1379, putative, expressed -
11 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
12 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
13 Sobic.004G168300 E2F family transcription factor protein, putative, expressed K06620: transcription factor E2F3
14 Sobic.006G259900 reticulon domain containing protein, putative, expressed -
15 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
16 Sobic.002G395700 DNA repair protein RAD51 homolog 4, putative, expressed K10871: RAD51L3, RAD51-like protein 3
17 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
18 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
19 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
20 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4


Gene co-expression network
sample Sobic002G277200 Sobic002G277200 Sobic009G002000 Sobic009G002000 Sobic002G277200--Sobic009G002000 Sobic004G010700 Sobic004G010700 Sobic002G277200--Sobic004G010700 Sobic009G258500 Sobic009G258500 Sobic002G277200--Sobic009G258500 Sobic009G201800 Sobic009G201800 Sobic002G277200--Sobic009G201800 Sobic001G157600 Sobic001G157600 Sobic002G277200--Sobic001G157600 Sobic003G410400 Sobic003G410400 Sobic002G277200--Sobic003G410400 Sobic009G102900 Sobic009G102900 Sobic002G277200--Sobic009G102900 Sobic006G127500 Sobic006G127500 Sobic002G277200--Sobic006G127500 Sobic002G142700 Sobic002G142700 Sobic002G277200--Sobic002G142700 Sobic009G002000--Sobic002G277200 Sobic009G030400 Sobic009G030400 Sobic009G002000--Sobic009G030400 Sobic009G002000--Sobic009G201800 Sobic001G115500 Sobic001G115500 Sobic009G002000--Sobic001G115500 Sobic008G118500 Sobic008G118500 Sobic009G002000--Sobic008G118500 Sobic005G084900 Sobic005G084900 Sobic009G002000--Sobic005G084900 Sobic009G002000--Sobic009G102900 Sobic009G002000--Sobic001G157600 Sobic009G002000--Sobic009G258500 Sobic004G010700--Sobic009G201800 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic004G010700--Sobic002G277200 Sobic006G129900 Sobic006G129900 Sobic004G010700--Sobic006G129900 Sobic001G382200 Sobic001G382200 Sobic004G010700--Sobic001G382200 Sobic009G234400 Sobic009G234400 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100 Sobic009G258500--Sobic001G382200 Sobic009G258500--Sobic004G010700 Sobic009G258500--Sobic009G201800 Sobic003G198300 Sobic003G198300 Sobic009G258500--Sobic003G198300 Sobic006G226500 Sobic006G226500 Sobic009G258500--Sobic006G226500 Sobic004G252000 Sobic004G252000 Sobic009G258500--Sobic004G252000 Sobic004G047200 Sobic004G047200 Sobic009G258500--Sobic004G047200 Sobic008G016100 Sobic008G016100 Sobic009G258500--Sobic008G016100 Sobic004G249300 Sobic004G249300 Sobic009G258500--Sobic004G249300 Sobic002G044000 Sobic002G044000 Sobic009G201800--Sobic002G044000 Sobic009G201800--Sobic004G010700 Sobic009G201800--Sobic004G249300 Sobic009G201800--Sobic001G382200 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic001G285300 Sobic001G285300 Sobic009G201800--Sobic001G285300 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic010G256200 Sobic010G256200 Sobic001G157600--Sobic010G256200 Sobic006G245700 Sobic006G245700 Sobic001G157600--Sobic006G245700 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G436300 Sobic001G436300 Sobic001G157600--Sobic001G436300 Sobic001G157600--Sobic001G115500 Sobic010G154000 Sobic010G154000 Sobic001G157600--Sobic010G154000 Sobic002G306600 Sobic002G306600 Sobic001G157600--Sobic002G306600 Sobic001G157600--Sobic009G002000 Sobic008G058700 Sobic008G058700 Sobic003G410400--Sobic008G058700 Sobic003G043400 Sobic003G043400 Sobic003G410400--Sobic003G043400 Sobic003G312400 Sobic003G312400 Sobic003G410400--Sobic003G312400 Sobic003G410400--Sobic009G201800 Sobic003G252900 Sobic003G252900 Sobic003G410400--Sobic003G252900 Sobic003G319000 Sobic003G319000 Sobic003G410400--Sobic003G319000 Sobic003G039200 Sobic003G039200 Sobic003G410400--Sobic003G039200 Sobic003G031200 Sobic003G031200 Sobic003G410400--Sobic003G031200 Sobic003G410400--Sobic004G010700 Sobic009G102900--Sobic001G115500 Sobic009G102900--Sobic003G198300 Sobic001G178400 Sobic001G178400 Sobic009G102900--Sobic001G178400 Sobic009G102900--Sobic004G249300 Sobic009G102900--Sobic008G118500 Sobic009G102900--Sobic009G002000 Sobic001G008500 Sobic001G008500 Sobic009G102900--Sobic001G008500 Sobic001G346300 Sobic001G346300 Sobic009G102900--Sobic001G346300 Sobic009G102900--Sobic004G047200 Sobic006G127500--Sobic001G436300 Sobic006G127500--Sobic001G157600 Sobic006G251600 Sobic006G251600 Sobic006G127500--Sobic006G251600 Sobic003G028400 Sobic003G028400 Sobic006G127500--Sobic003G028400 Sobic003G098200 Sobic003G098200 Sobic006G127500--Sobic003G098200 Sobic004G343600 Sobic004G343600 Sobic006G127500--Sobic004G343600 Sobic001G097400 Sobic001G097400 Sobic006G127500--Sobic001G097400 Sobic001G235700 Sobic001G235700 Sobic006G127500--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic006G127500--Sobic001G107300 Sobic002G399900 Sobic002G399900 Sobic002G142700--Sobic002G399900 Sobic007G051400 Sobic007G051400 Sobic002G142700--Sobic007G051400 Sobic002G208400 Sobic002G208400 Sobic002G142700--Sobic002G208400 Sobic004G256300 Sobic004G256300 Sobic002G142700--Sobic004G256300 Sobic003G221500 Sobic003G221500 Sobic002G142700--Sobic003G221500 Sobic003G222700 Sobic003G222700 Sobic002G142700--Sobic003G222700 Sobic001G229300 Sobic001G229300 Sobic002G142700--Sobic001G229300 Sobic001G373000 Sobic001G373000 Sobic002G142700--Sobic001G373000 Sobic003G360300 Sobic003G360300 Sobic002G142700--Sobic003G360300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.